RNA–Protein interactions for RNA: ENST00000559339.1

SNX1-205, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 101 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-205ENST00000559339 GSDMBQ8TAX9 411 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 HM13Q8TCT9 377 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 ACTRT1Q8TDG2 376 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 HNRNPLLQ8WVV9 542 aaKnown RBP4.29□□□□□ -1.72
SNX1-205ENST00000559339 ZFPM2Q8WW38 1151 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 KCNE4Q8WWG9 221 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 HDAC10Q969S8 669 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 SGSM3Q96HU1 749 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 DNAJC1Q96KC8 554 aaKnown RBP4.29□□□□□ -1.72
SNX1-205ENST00000559339 LINC00615Q96LM1 132 aaPredicted RBP4.29□□□□□ -1.72
SNX1-205ENST00000559339 CCDC74BQ96LY2 380 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 C12orf66Q96MD2 445 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 RUNDC3BQ96NL0 473 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 TEFMQ96QE5 360 aaKnown RBP4.29□□□□□ -1.72
SNX1-205ENST00000559339 RANBP9Q96S59 729 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 NUDT22Q9BRQ3 303 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 AP1M1Q9BXS5 423 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 DPH1Q9BZG8 443 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 B3GNT4Q9C0J1 378 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 SEMA6CQ9H3T2 930 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 FAM96AQ9H5X1 160 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 SLC40A1Q9NP59 571 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 CASS4Q9NQ75 786 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 IMP3Q9NV31 184 aaKnown RBP4.29□□□□□ -1.72
SNX1-205ENST00000559339 ZDHHC3Q9NYG2 299 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 SMARCAL1Q9NZC9 954 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 SAMD15Q9P1V8 674 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 FAM8A1Q9UBU6 413 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 PISDQ9UG56 409 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 TMPRSS11EQ9UL52 423 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 RIMKLBQ9ULI2 386 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 SNX12Q9UMY4 172 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 KCTD3Q9Y597 815 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 PCDHGA7Q9Y5G6 932 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 PCYT1BQ9Y5K3 369 aaPredicted RBP4.29□□□□□ -1.72
SNX1-205ENST00000559339 HEBP2Q9Y5Z4 205 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 APC2O95996 2303 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 URB1O60287 2271 aaKnown RBP4.29□□□□□ -1.72
SNX1-205ENST00000559339 ANKRD36A6QL64 1941 aa4.29□□□□□ -1.72
SNX1-205ENST00000559339 ASXL3Q9C0F0 2248 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP4.28□□□□□ -1.72
SNX1-205ENST00000559339 IGLV3-16A0A075B6K0 115 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 TRBV5-4A0A0C4DH59 114 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 CCDC78A2IDD5 438 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 SDR42E2A6NKP2 422 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 EFCAB7A8K855 629 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 A8MU76 341 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 CDRT15L2A8MXV6 281 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 STMND1H3BQB6 276 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 AGRPO00253 132 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 MATN2O00339 956 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 CCL22O00626 93 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 LIN7AO14910 233 aaPredicted RBP4.28□□□□□ -1.72
SNX1-205ENST00000559339 KPNA5O15131 536 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 POLR1CO15160 346 aaPredicted RBP4.28□□□□□ -1.72
SNX1-205ENST00000559339 CAPN5O15484 640 aaPredicted RBP4.28□□□□□ -1.72
SNX1-205ENST00000559339 PHF2O75151 1096 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 GOT2P00505 430 aaKnown RBP4.28□□□□□ -1.72
SNX1-205ENST00000559339 KRT14P02533 472 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 RPN2P04844 631 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 POLBP06746 335 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 THRAP10827 490 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 MTHFD1P11586 935 aaKnown RBP4.28□□□□□ -1.72
SNX1-205ENST00000559339 MLNP12872 115 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 HGFP14210 728 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 HOXB1P14653 301 aaPredicted RBP4.28□□□□□ -1.72
SNX1-205ENST00000559339 BRAFP15056 766 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 TYRP1P17643 537 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 ITIH1P19827 911 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 TPSB2P20231 275 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 MPSTP25325 297 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 SLC5A2P31639 672 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 COILP38432 576 aaPredicted RBP4.28□□□□□ -1.72
SNX1-205ENST00000559339 SLC19A1P41440 591 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 GRIA1P42261 906 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 CAPZBP47756 277 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 CD151P48509 253 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 ARL4DP49703 201 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 VPS41P49754 854 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 MAPK10P53779 464 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 TMPRSS3P57727 454 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 UBE2IP63279 158 aaKnown RBP4.28□□□□□ -1.72
SNX1-205ENST00000559339 RPA4Q13156 261 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 GPR18Q14330 331 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 CLCA4Q14CN2 919 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 TMED2Q15363 201 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 TRIP13Q15645 432 aaPredicted RBP4.28□□□□□ -1.72
SNX1-205ENST00000559339 TPSAB1Q15661 275 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 DBN1Q16643 649 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 CYP1B1Q16678 543 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 SYTL3Q4VX76 610 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 DCAF12Q5T6F0 453 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 TSTD2Q5T7W7 516 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 RNF187Q5TA31 235 aaPredicted RBP4.28□□□□□ -1.72
SNX1-205ENST00000559339 PTRHD1Q6GMV3 140 aaKnown RBP4.28□□□□□ -1.72
SNX1-205ENST00000559339 MRNIPQ6NTE8 343 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 IRGCQ6NXR0 463 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 LRRC8BQ6P9F7 803 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 CLEC14AQ86T13 490 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 PRUNE1Q86TP1 453 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms