RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 DENND1AQ8TEH3 1009 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 PIGOQ8TEQ8 1089 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 SLC20A1Q8WUM9 679 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 TMED6Q8WW62 240 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 KCNE4Q8WWG9 221 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 MR1Q95460 341 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 RPL36ALQ969Q0 106 aaKnown RBP1.6□□□□□ -2.15
USP3-209ENST00000558925 EXOC4Q96A65 974 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 MOAP1Q96BY2 351 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 HDAC11Q96DB2 347 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 SPACA9Q96E40 222 aaPredicted RBP1.6□□□□□ -2.15
USP3-209ENST00000558925 SCMH1Q96GD3 660 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 PRMT6Q96LA8 375 aaPredicted RBP1.6□□□□□ -2.15
USP3-209ENST00000558925 C3orf30Q96M34 536 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 CFAP57Q96MR6 1250 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 TTC14Q96N46 770 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 LRFN5Q96NI6 719 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 DACH2Q96NX9 599 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 MS4A10Q96PG2 267 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 GBP5Q96PP8 586 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 OR6C1Q96RD1 312 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 SH3GL2Q99962 352 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 MGME1Q9BQP7 344 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 SLC25A23Q9BV35 468 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 THUMPD3Q9BV44 507 aaKnown RBP1.6□□□□□ -2.15
USP3-209ENST00000558925 KATNB1Q9BVA0 655 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 FNDC11Q9BVV2 318 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 DCLK3Q9C098 648 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 TMEM39BQ9GZU3 492 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 RAB6CQ9H0N0 254 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 RBM38Q9H0Z9 239 aaKnown RBP1.6□□□□□ -2.15
USP3-209ENST00000558925 CSTL1Q9H114 145 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 FZD8Q9H461 694 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 NOL11Q9H8H0 719 aaKnown RBP1.6□□□□□ -2.15
USP3-209ENST00000558925 LRRC4Q9HBW1 653 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 Q9N2K0 584 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 MYNNQ9NPC7 610 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 EQTNQ9NQ60 294 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 ABCF3Q9NUQ8 709 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 CWC25Q9NXE8 425 aaPredicted RBP1.6□□□□□ -2.15
USP3-209ENST00000558925 TRMT1Q9NXH9 659 aaKnown RBP1.6□□□□□ -2.15
USP3-209ENST00000558925 SLC24A2Q9UI40 661 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 GTF3C4Q9UKN8 822 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 KCNK7Q9Y2U2 307 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 PAM16Q9Y3D7 125 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 OR2W1Q9Y3N9 320 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 LOXL2Q9Y4K0 774 aa1.6□□□□□ -2.15
USP3-209ENST00000558925 ZFP37Q9Y6Q3 630 aaPredicted RBP1.6□□□□□ -2.15
USP3-209ENST00000558925 PDS5AQ29RF7 1337 aaKnown RBP1.6□□□□□ -2.15
USP3-209ENST00000558925 ZNF644Q9H582 1327 aaPredicted RBP1.6□□□□□ -2.15
USP3-209ENST00000558925 OR2M5A3KFT3 312 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 ANKUB1A6NFN9 424 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 C5orf60A6NFR6 353 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 TMEM221A6NGB7 291 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 OR6C76A6NM76 312 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 SRRM3A6NNA2 597 aaPredicted RBP1.59□□□□□ -2.15
USP3-209ENST00000558925 ENO4A6NNW6 628 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 FAM86B1E9PN63 330 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 H0Y626 953 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 H3BNX3 289 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 SOCS2O14508 198 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 MEIS2O14770 477 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 PPEF2O14830 753 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 CLIC2O15247 247 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 MID1O15344 667 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 KCNN4O15554 427 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 ASAP2O43150 1006 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 SSX4O60224 188 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 PRAMEF11O60813 436 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 SERPINI2O75830 405 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 SLU7O95391 586 aaKnown RBP1.59□□□□□ -2.15
USP3-209ENST00000558925 CLDN14O95500 239 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 FAM86B2P0C5J1 330 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 LINGO3P0C6S8 592 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 IGHV4-30-4P0DP06 118 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 ACP2P11117 423 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 MYOD1P15172 320 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 TCF4P15884 667 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 ITGA2P17301 1181 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 DDX5P17844 614 aaKnown RBP1.59□□□□□ -2.15
USP3-209ENST00000558925 S1PR1P21453 382 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 HOXC8P31273 242 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 KCNJ1P48048 391 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 CLCNKAP51800 687 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 RAD23BP54727 409 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 TPD52P55327 224 aaPredicted RBP1.59□□□□□ -2.15
USP3-209ENST00000558925 CDK3Q00526 305 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 RBPJQ06330 500 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 SLC20A2Q08357 652 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 Q0VFX4 171 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 PNRC1Q12796 327 aaPredicted RBP1.59□□□□□ -2.15
USP3-209ENST00000558925 MYBPHQ13203 477 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 PPP2R5CQ13362 524 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 PPIGQ13427 754 aaKnown RBP eCLIP1.59□□□□□ -2.152e-7■■■□□ 15.2
USP3-209ENST00000558925 NFATC4Q14934 902 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 E2F5Q15329 346 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 OASLQ15646 514 aaKnown RBP1.59□□□□□ -2.15
USP3-209ENST00000558925 ZNF674Q2M3X9 581 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 ARMC4Q5T2S8 1044 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 STXBP5Q5T5C0 1151 aa1.59□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms