RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 NPLOC4Q8TAT6 608 aa16.08■□□□□ 0.16
SHMT2-232ENST00000557487 SLC22A17Q8WUG5 538 aa16.08■□□□□ 0.16
SHMT2-232ENST00000557487 ZNF566Q969W8 418 aa16.08■□□□□ 0.16
SHMT2-232ENST00000557487 FKBP10Q96AY3 582 aa16.08■□□□□ 0.16
SHMT2-232ENST00000557487 RETREG1Q9H6L5 497 aa16.08■□□□□ 0.16
SHMT2-232ENST00000557487 MAGIXQ9H6Y5 334 aa16.08■□□□□ 0.16
SHMT2-232ENST00000557487 SLAMF8Q9P0V8 285 aa16.08■□□□□ 0.16
SHMT2-232ENST00000557487 C3orf18Q9UK00 162 aa16.08■□□□□ 0.16
SHMT2-232ENST00000557487 PCDHGB1Q9Y5G3 927 aa16.08■□□□□ 0.16
SHMT2-232ENST00000557487 TNPO3Q9Y5L0 923 aaKnown RBP16.08■□□□□ 0.16
SHMT2-232ENST00000557487 UBA6A0AVT1 1052 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-232ENST00000557487 BTN3A1O00481 513 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 ZNF623O75123 536 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 KCNH1O95259 989 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 ALDH2P05091 517 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 IL1RNP18510 177 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 RYKP34925 604 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 ZNF140P52738 457 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-232ENST00000557487 PPP2R2BQ00005 443 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 ECT2LQ008S8 904 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 TRIM32Q13049 653 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 ITGADQ13349 1161 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 OXA1LQ15070 435 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 FAM219BQ5XKK7 198 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 SLC2A7Q6PXP3 512 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 NECAB2Q7Z6G3 386 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 GPSM1Q86YR5 675 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 FAM126BQ8IXS8 530 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 CARNMT1Q8N4J0 409 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 OR13C4Q8NGS5 318 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 DNAJB8Q8NHS0 232 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 SH3YL1Q96HL8 342 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-232ENST00000557487 SUSD3Q96L08 255 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 AP5M1Q9H0R1 490 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 NUDT4Q9NZJ9 180 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 ZNF225Q9UK10 706 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 BAG5Q9UL15 447 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 MED16Q9Y2X0 877 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 SH3BP1Q9Y3L3 701 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 ARIH1Q9Y4X5 557 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-232ENST00000557487 CORINQ9Y5Q5 1042 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 NPEPPSL1A6NEC2 478 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 TTC36A6NLP5 189 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 J3QRK9 145 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 SLC22A1O15245 554 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 MT-ND1P03886 318 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 FMO4P31512 558 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 RPS3AP61247 264 aaKnown RBP16.07■□□□□ 0.16
SHMT2-232ENST00000557487 ACOX1Q15067 660 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 TAF1AQ15573 450 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-232ENST00000557487 ALFQ53S48 1182 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 RNF165Q6ZSG1 346 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 ADHFE1Q8IWW8 467 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 TMCO5AQ8N6Q1 288 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 FBXL8Q96CD0 374 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 ZNF641Q96N77 438 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-232ENST00000557487 CSF3RQ99062 836 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 ZBTB18Q99592 522 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 FUNDC2Q9BWH2 189 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 OLA1Q9NTK5 396 aaKnown RBP16.07■□□□□ 0.16
SHMT2-232ENST00000557487 WARS2Q9UGM6 360 aaKnown RBP16.07■□□□□ 0.16
SHMT2-232ENST00000557487 TRMT6Q9UJA5 497 aaKnown RBP16.07■□□□□ 0.16
SHMT2-232ENST00000557487 NLRC5Q86WI3 1866 aa16.07■□□□□ 0.16
SHMT2-232ENST00000557487 CDC7O00311 574 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 E2F3O00716 465 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 GSTA4O15217 222 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 GPR182O15218 404 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 KPNA6O60684 536 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 UGT2B11O75310 529 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 BCAS1O75363 584 aaPredicted RBP16.06■□□□□ 0.16
SHMT2-232ENST00000557487 PKMP14618 531 aaKnown RBP16.06■□□□□ 0.16
SHMT2-232ENST00000557487 NFKBIAP25963 317 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 BRCC3P46736 316 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 SERPINB10P48595 397 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 CLCN4P51793 760 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 AFF1P51825 1210 aaKnown RBP16.06■□□□□ 0.16
SHMT2-232ENST00000557487 IL2P60568 153 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 GNA12Q03113 381 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 MAD2L1Q13257 205 aaPredicted RBP16.06■□□□□ 0.16
SHMT2-232ENST00000557487 TUSC3Q13454 348 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 TRIP4Q15650 581 aaPredicted RBP16.06■□□□□ 0.16
SHMT2-232ENST00000557487 UGT3A1Q6NUS8 523 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 CYP20A1Q6UW02 462 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 CD300LGQ6UXG3 332 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 Q6ZSR9 355 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 GLB1L3Q8NCI6 653 aaPredicted RBP16.06■□□□□ 0.16
SHMT2-232ENST00000557487 OR2T12Q8NG77 320 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 OR5K1Q8NHB7 308 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 PPP1R13LQ8WUF5 828 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 LPPQ93052 612 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 C8orf48Q96LL4 319 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 PPP3R2Q96LZ3 170 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 TRIB3Q96RU7 358 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 MBOAT4Q96T53 435 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 GPR21Q99679 349 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 PSD2Q9BQI7 771 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 PAAF1Q9BRP4 392 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 FAM50BQ9Y247 325 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 PCDHGA8Q9Y5G5 932 aa16.06■□□□□ 0.16
SHMT2-232ENST00000557487 ST14Q9Y5Y6 855 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms