RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 CASC4Q6P4E1 433 aa12.24□□□□□ -0.45
SLIRP-209ENST00000557342 TMEM71Q6P5X7 295 aa12.24□□□□□ -0.45
SLIRP-209ENST00000557342 FAM83HQ6ZRV2 1179 aaPredicted RBP12.24□□□□□ -0.45
SLIRP-209ENST00000557342 TMEM26Q6ZUK4 368 aa12.24□□□□□ -0.45
SLIRP-209ENST00000557342 USP53Q70EK8 1073 aa12.24□□□□□ -0.45
SLIRP-209ENST00000557342 CAND1Q86VP6 1230 aaKnown RBP12.24□□□□□ -0.45
SLIRP-209ENST00000557342 ZNF761Q86XN6 746 aaPredicted RBP12.24□□□□□ -0.45
SLIRP-209ENST00000557342 CFAP206Q8IYR0 622 aa12.24□□□□□ -0.45
SLIRP-209ENST00000557342 C17orf53Q8N3J3 647 aaPredicted RBP12.24□□□□□ -0.45
SLIRP-209ENST00000557342 MPP5Q8N3R9 675 aa12.24□□□□□ -0.45
SLIRP-209ENST00000557342 OR4D9Q8NGE8 314 aa12.24□□□□□ -0.45
SLIRP-209ENST00000557342 SERPINB12Q96P63 405 aa12.24□□□□□ -0.45
SLIRP-209ENST00000557342 TSSK1BQ9BXA7 367 aa12.24□□□□□ -0.45
SLIRP-209ENST00000557342 EPB41L5Q9HCM4 733 aa12.24□□□□□ -0.45
SLIRP-209ENST00000557342 SATB2Q9UPW6 733 aa12.24□□□□□ -0.45
SLIRP-209ENST00000557342 WDR37Q9Y2I8 494 aa12.24□□□□□ -0.45
SLIRP-209ENST00000557342 PCDHGA8Q9Y5G5 932 aa12.24□□□□□ -0.45
SLIRP-209ENST00000557342 FAM237BA0A1B0GVD1 139 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 OR52A4PA6NMU1 304 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 GOLGA8MH3BSY2 632 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 SMAPO00193 183 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 PFDN6O15212 129 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 CD3EAPO15446 510 aaKnown RBP12.23□□□□□ -0.45
SLIRP-209ENST00000557342 DXOO77932 396 aaKnown RBP12.23□□□□□ -0.45
SLIRP-209ENST00000557342 MPOP05164 745 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 RBMS1P29558 406 aaKnown RBP12.23□□□□□ -0.45
SLIRP-209ENST00000557342 PTGIRP43119 386 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 LIMK2P53671 638 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 RPA4Q13156 261 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 RPE65Q16518 533 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 PHF19Q5T6S3 580 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 RNASEH2BQ5TBB1 312 aaKnown RBP12.23□□□□□ -0.45
SLIRP-209ENST00000557342 NKAIN2Q5VXU1 208 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 WDR74Q6RFH5 385 aaPredicted RBP12.23□□□□□ -0.45
SLIRP-209ENST00000557342 IGF2-ASQ6U949 168 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 SYT10Q6XYQ8 523 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 RAB11FIP2Q7L804 512 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 B3GNT8Q7Z7M8 397 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 SDCCAG8Q86SQ7 713 aaPredicted RBP12.23□□□□□ -0.45
SLIRP-209ENST00000557342 HOOK3Q86VS8 718 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 PROSER1Q86XN7 944 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 SLITRK4Q8IW52 837 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 FBXO39Q8N4B4 442 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 CLDN19Q8N6F1 224 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 ZFPM2Q8WW38 1151 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 MFSD3Q96ES6 412 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 CCDC97Q96F63 343 aaPredicted RBP12.23□□□□□ -0.45
SLIRP-209ENST00000557342 CMKLR1Q99788 373 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 NUDT22Q9BRQ3 303 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 FOXP3Q9BZS1 431 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 WWP1Q9H0M0 922 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 COG4Q9H9E3 785 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 RDH14Q9HBH5 336 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 SLC40A1Q9NP59 571 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 FAM8A1Q9UBU6 413 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 ZMIZ1Q9ULJ6 1067 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 PSMD13Q9UNM6 376 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 HEBP2Q9Y5Z4 205 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 COLEC10Q9Y6Z7 277 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 BPTFQ12830 3046 aa12.23□□□□□ -0.45
SLIRP-209ENST00000557342 IGHV5-10-1A0A0J9YXX1 117 aa12.22□□□□□ -0.45
SLIRP-209ENST00000557342 IFRD1O00458 451 aaPredicted RBP12.22□□□□□ -0.45
SLIRP-209ENST00000557342 NDC80O14777 642 aa12.22□□□□□ -0.45
SLIRP-209ENST00000557342 LIN7AO14910 233 aaPredicted RBP12.22□□□□□ -0.45
SLIRP-209ENST00000557342 PLD2O14939 933 aa12.22□□□□□ -0.45
SLIRP-209ENST00000557342 HGSO14964 777 aaPredicted RBP12.22□□□□□ -0.45
SLIRP-209ENST00000557342 FANCGO15287 622 aa12.22□□□□□ -0.45
SLIRP-209ENST00000557342 BRINP1O60477 761 aa12.22□□□□□ -0.45
SLIRP-209ENST00000557342 AVILO75366 819 aa12.22□□□□□ -0.45
SLIRP-209ENST00000557342 VAPBO95292 243 aa12.22□□□□□ -0.45
SLIRP-209ENST00000557342 POLBP06746 335 aa12.22□□□□□ -0.45
SLIRP-209ENST00000557342 MTHFD1P11586 935 aaKnown RBP12.22□□□□□ -0.45
SLIRP-209ENST00000557342 AMD1P17707 334 aa12.22□□□□□ -0.45
SLIRP-209ENST00000557342 NDUFS1P28331 727 aa12.22□□□□□ -0.45
SLIRP-209ENST00000557342 MAGEA3P43357 314 aa12.22□□□□□ -0.45
SLIRP-209ENST00000557342 MAPK9P45984 424 aa12.22□□□□□ -0.45
SLIRP-209ENST00000557342 ERVPABLB-1P60509 514 aa12.22□□□□□ -0.45
SLIRP-209ENST00000557342 PLOD1Q02809 727 aaPredicted RBP12.22□□□□□ -0.45
SLIRP-209ENST00000557342 IZUMO3Q5VZ72 239 aa12.22□□□□□ -0.45
SLIRP-209ENST00000557342 KIAA0930Q6ICG6 404 aaPredicted RBP12.22□□□□□ -0.45
SLIRP-209ENST00000557342 CAPRIN2Q6IMN6 1127 aaKnown RBP12.22□□□□□ -0.45
SLIRP-209ENST00000557342 MRNIPQ6NTE8 343 aa12.22□□□□□ -0.45
SLIRP-209ENST00000557342 MICALCLQ6ZW33 695 aa12.22□□□□□ -0.45
SLIRP-209ENST00000557342 LRRC6Q86X45 466 aa12.22□□□□□ -0.45
SLIRP-209ENST00000557342 JAMLQ86YT9 394 aa12.22□□□□□ -0.45
SLIRP-209ENST00000557342 PLXDC1Q8IUK5 500 aa12.22□□□□□ -0.45
SLIRP-209ENST00000557342 OTUD6BQ8N6M0 293 aa12.22□□□□□ -0.45
SLIRP-209ENST00000557342 NAT14Q8WUY8 206 aa12.22□□□□□ -0.45
SLIRP-209ENST00000557342 NCSTNQ92542 709 aa12.22□□□□□ -0.45
SLIRP-209ENST00000557342 C12orf66Q96MD2 445 aa12.22□□□□□ -0.45
SLIRP-209ENST00000557342 ZNF578Q96N58 590 aaPredicted RBP12.22□□□□□ -0.45
SLIRP-209ENST00000557342 INSM2Q96T92 566 aaPredicted RBP12.22□□□□□ -0.45
SLIRP-209ENST00000557342 TBC1D10AQ9BXI6 508 aa12.22□□□□□ -0.45
SLIRP-209ENST00000557342 SEMA6CQ9H3T2 930 aa12.22□□□□□ -0.45
SLIRP-209ENST00000557342 IMP3Q9NV31 184 aaKnown RBP12.22□□□□□ -0.45
SLIRP-209ENST00000557342 PRSS21Q9Y6M0 314 aa12.22□□□□□ -0.45
SLIRP-209ENST00000557342 PRMT5O14744 637 aaPredicted RBP12.21□□□□□ -0.45
SLIRP-209ENST00000557342 NDUFS3O75489 264 aa12.21□□□□□ -0.45
SLIRP-209ENST00000557342 USP1O94782 785 aa12.21□□□□□ -0.45
SLIRP-209ENST00000557342 UBXN7O94888 489 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms