RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 PRAMEP78395 509 aa3.47□□□□□ -1.85
SCFD1-216ENST00000555550 SPOCK1Q08629 439 aa3.47□□□□□ -1.85
SCFD1-216ENST00000555550 ITGA9Q13797 1035 aa3.47□□□□□ -1.85
SCFD1-216ENST00000555550 KIAA1644Q3SXP7 199 aa3.47□□□□□ -1.85
SCFD1-216ENST00000555550 ZFP69Q49AA0 526 aa3.47□□□□□ -1.85
SCFD1-216ENST00000555550 FFAR4Q5NUL3 377 aa3.47□□□□□ -1.85
SCFD1-216ENST00000555550 ZC2HC1BQ5TFG8 222 aa3.47□□□□□ -1.85
SCFD1-216ENST00000555550 TMEM198Q66K66 360 aa3.47□□□□□ -1.85
SCFD1-216ENST00000555550 TMEM154Q6P9G4 183 aa3.47□□□□□ -1.85
SCFD1-216ENST00000555550 SARM1Q6SZW1 724 aa3.47□□□□□ -1.85
SCFD1-216ENST00000555550 MFSD6Q6ZSS7 791 aa3.47□□□□□ -1.85
SCFD1-216ENST00000555550 PXKQ7Z7A4 578 aa3.47□□□□□ -1.85
SCFD1-216ENST00000555550 TSPAN33Q86UF1 283 aa3.47□□□□□ -1.85
SCFD1-216ENST00000555550 TRIM58Q8NG06 486 aa3.47□□□□□ -1.85
SCFD1-216ENST00000555550 TRPC4APQ8TEL6 797 aa3.47□□□□□ -1.85
SCFD1-216ENST00000555550 TMEM143Q96AN5 459 aa3.47□□□□□ -1.85
SCFD1-216ENST00000555550 DDOQ99489 341 aa3.47□□□□□ -1.85
SCFD1-216ENST00000555550 GFI1Q99684 422 aa3.47□□□□□ -1.85
SCFD1-216ENST00000555550 ASCL2Q99929 193 aa3.47□□□□□ -1.85
SCFD1-216ENST00000555550 UNC45AQ9H3U1 944 aa3.47□□□□□ -1.85
SCFD1-216ENST00000555550 AASSQ9UDR5 926 aa3.47□□□□□ -1.85
SCFD1-216ENST00000555550 DNAJB4Q9UDY4 337 aa3.47□□□□□ -1.85
SCFD1-216ENST00000555550 PNMA2Q9UL42 364 aa3.47□□□□□ -1.85
SCFD1-216ENST00000555550 SESN1Q9Y6P5 492 aa3.47□□□□□ -1.85
SCFD1-216ENST00000555550 ARHGEF40Q8TER5 1519 aa3.46□□□□□ -1.86
SCFD1-216ENST00000555550 MYO1GB0I1T2 1018 aa3.46□□□□□ -1.86
SCFD1-216ENST00000555550 SH2B2O14492 632 aaPredicted RBP3.46□□□□□ -1.86
SCFD1-216ENST00000555550 H1F0P07305 194 aaKnown RBP3.46□□□□□ -1.86
SCFD1-216ENST00000555550 SRPRAP08240 638 aaKnown RBP3.46□□□□□ -1.86
SCFD1-216ENST00000555550 RARGP13631 454 aa3.46□□□□□ -1.86
SCFD1-216ENST00000555550 ACADLP28330 430 aa3.46□□□□□ -1.86
SCFD1-216ENST00000555550 CSRP3P50461 194 aa3.46□□□□□ -1.86
SCFD1-216ENST00000555550 PPP2R2BQ00005 443 aa3.46□□□□□ -1.86
SCFD1-216ENST00000555550 IKQ13123 557 aaPredicted RBP3.46□□□□□ -1.86
SCFD1-216ENST00000555550 MFAP5Q13361 173 aa3.46□□□□□ -1.86
SCFD1-216ENST00000555550 KRT32Q14532 448 aa3.46□□□□□ -1.86
SCFD1-216ENST00000555550 PCGF3Q3KNV8 242 aa3.46□□□□□ -1.86
SCFD1-216ENST00000555550 ARHGEF16Q5VV41 709 aa3.46□□□□□ -1.86
SCFD1-216ENST00000555550 ALS2CLQ60I27 953 aa3.46□□□□□ -1.86
SCFD1-216ENST00000555550 KLHL35Q6PF15 583 aa3.46□□□□□ -1.86
SCFD1-216ENST00000555550 STXBP4Q6ZWJ1 553 aa3.46□□□□□ -1.86
SCFD1-216ENST00000555550 ZNF534Q76KX8 674 aa3.46□□□□□ -1.86
SCFD1-216ENST00000555550 NOTCH2NLQ7Z3S9 236 aa3.46□□□□□ -1.86
SCFD1-216ENST00000555550 ISCA2Q86U28 154 aa3.46□□□□□ -1.86
SCFD1-216ENST00000555550 GALNT13Q8IUC8 556 aa3.46□□□□□ -1.86
SCFD1-216ENST00000555550 CEP97Q8IW35 865 aa3.46□□□□□ -1.86
SCFD1-216ENST00000555550 LYG1Q8N1E2 194 aa3.46□□□□□ -1.86
SCFD1-216ENST00000555550 DNAJC22Q8N4W6 341 aa3.46□□□□□ -1.86
SCFD1-216ENST00000555550 NGEFQ8N5V2 710 aa3.46□□□□□ -1.86
SCFD1-216ENST00000555550 DDHD1Q8NEL9 900 aa3.46□□□□□ -1.86
SCFD1-216ENST00000555550 OR2T12Q8NG77 320 aa3.46□□□□□ -1.86
SCFD1-216ENST00000555550 CMTM3Q96MX0 182 aa3.46□□□□□ -1.86
SCFD1-216ENST00000555550 PLK3Q9H4B4 646 aa3.46□□□□□ -1.86
SCFD1-216ENST00000555550 DNAJC18Q9H819 358 aa3.46□□□□□ -1.86
SCFD1-216ENST00000555550 OLFML3Q9NRN5 406 aa3.46□□□□□ -1.86
SCFD1-216ENST00000555550 KRT84Q9NSB2 600 aa3.46□□□□□ -1.86
SCFD1-216ENST00000555550 OLA1Q9NTK5 396 aaKnown RBP3.46□□□□□ -1.86
SCFD1-216ENST00000555550 TRMT1Q9NXH9 659 aaKnown RBP3.46□□□□□ -1.86
SCFD1-216ENST00000555550 TSPYL4Q9UJ04 414 aa3.46□□□□□ -1.86
SCFD1-216ENST00000555550 RABGAP1Q9Y3P9 1069 aa3.46□□□□□ -1.86
SCFD1-216ENST00000555550 TMEM8BA6NDV4 472 aa3.45□□□□□ -1.86
SCFD1-216ENST00000555550 OR6C76A6NM76 312 aa3.45□□□□□ -1.86
SCFD1-216ENST00000555550 MAGEB17A8MXT2 336 aa3.45□□□□□ -1.86
SCFD1-216ENST00000555550 J3KRW8 73 aa3.45□□□□□ -1.86
SCFD1-216ENST00000555550 DDX58O95786 925 aaKnown RBP3.45□□□□□ -1.86
SCFD1-216ENST00000555550 GH2P01242 217 aa3.45□□□□□ -1.86
SCFD1-216ENST00000555550 HMBSP08397 361 aa3.45□□□□□ -1.86
SCFD1-216ENST00000555550 LIFP15018 202 aa3.45□□□□□ -1.86
SCFD1-216ENST00000555550 CBLP22681 906 aa3.45□□□□□ -1.86
SCFD1-216ENST00000555550 CAMPP49913 170 aa3.45□□□□□ -1.86
SCFD1-216ENST00000555550 CDH11P55287 796 aa3.45□□□□□ -1.86
SCFD1-216ENST00000555550 DSCR10P59022 87 aa3.45□□□□□ -1.86
SCFD1-216ENST00000555550 KRTAP10-8P60410 259 aa3.45□□□□□ -1.86
SCFD1-216ENST00000555550 IRX1P78414 480 aaPredicted RBP3.45□□□□□ -1.86
SCFD1-216ENST00000555550 PLA2G7Q13093 441 aa3.45□□□□□ -1.86
SCFD1-216ENST00000555550 TMEM187Q14656 261 aa3.45□□□□□ -1.86
SCFD1-216ENST00000555550 KRTAP13-3Q3SY46 172 aa3.45□□□□□ -1.86
SCFD1-216ENST00000555550 GTDC1Q4AE62 458 aa3.45□□□□□ -1.86
SCFD1-216ENST00000555550 HAUS3Q68CZ6 603 aa3.45□□□□□ -1.86
SCFD1-216ENST00000555550 ADALQ6DHV7 355 aa3.45□□□□□ -1.86
SCFD1-216ENST00000555550 KLC3Q6P597 504 aa3.45□□□□□ -1.86
SCFD1-216ENST00000555550 DENND5BQ6ZUT9 1274 aa3.45□□□□□ -1.86
SCFD1-216ENST00000555550 IKBIPQ70UQ0 350 aa3.45□□□□□ -1.86
SCFD1-216ENST00000555550 GTSCR1Q86UQ5 136 aa3.45□□□□□ -1.86
SCFD1-216ENST00000555550 TICAM1Q8IUC6 712 aa3.45□□□□□ -1.86
SCFD1-216ENST00000555550 ARID3BQ8IVW6 561 aaPredicted RBP3.45□□□□□ -1.86
SCFD1-216ENST00000555550 GPALPP1Q8IXQ4 340 aa3.45□□□□□ -1.86
SCFD1-216ENST00000555550 ATOH8Q96SQ7 321 aa3.45□□□□□ -1.86
SCFD1-216ENST00000555550 HGH1Q9BTY7 390 aa3.45□□□□□ -1.86
SCFD1-216ENST00000555550 MUC13Q9H3R2 512 aa3.45□□□□□ -1.86
SCFD1-216ENST00000555550 SIX2Q9NPC8 291 aa3.45□□□□□ -1.86
SCFD1-216ENST00000555550 COQ3Q9NZJ6 369 aa3.45□□□□□ -1.86
SCFD1-216ENST00000555550 TEX13DA0A0J9YY54 714 aaPredicted RBP3.44□□□□□ -1.86
SCFD1-216ENST00000555550 CCDC189A1A4V9 331 aa3.44□□□□□ -1.86
SCFD1-216ENST00000555550 PLEKHD1A6NEE1 506 aa3.44□□□□□ -1.86
SCFD1-216ENST00000555550 B4E171 279 aa3.44□□□□□ -1.86
SCFD1-216ENST00000555550 ZNF821O75541 412 aaPredicted RBP3.44□□□□□ -1.86
SCFD1-216ENST00000555550 CSPG5O95196 566 aa3.44□□□□□ -1.86
SCFD1-216ENST00000555550 GCNT3O95395 438 aa3.44□□□□□ -1.86
SCFD1-216ENST00000555550 CLTBP09497 229 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms