RNA–Protein interactions for RNA: ENST00000553686.5

ATXN3-223, Transcript of ataxin 3, human

TSL 1 (best)

Gene ATXN3, Length 869 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATXN3-223	ENST00000553686	CPA1	P15085	419 aa		5.95	□□□□□ -1.46
ATXN3-223	ENST00000553686	ITIH1	P19827	911 aa		5.95	□□□□□ -1.46
ATXN3-223	ENST00000553686	RPS6KB1	P23443	525 aa		5.95	□□□□□ -1.46
ATXN3-223	ENST00000553686	HLA-F	P30511	346 aa		5.95	□□□□□ -1.46
ATXN3-223	ENST00000553686	CORO1A	P31146	461 aa	Known RBP	5.95	□□□□□ -1.46
ATXN3-223	ENST00000553686	KCNJ5	P48544	419 aa		5.95	□□□□□ -1.46
ATXN3-223	ENST00000553686	SOX8	P57073	446 aa		5.95	□□□□□ -1.46
ATXN3-223	ENST00000553686	CCDC15	Q0P6D6	951 aa		5.95	□□□□□ -1.46
ATXN3-223	ENST00000553686	ORC2	Q13416	577 aa	Predicted RBP	5.95	□□□□□ -1.46
ATXN3-223	ENST00000553686	GTF2H3	Q13889	308 aa		5.95	□□□□□ -1.46
ATXN3-223	ENST00000553686	BOP1	Q14137	746 aa	Known RBP	5.95	□□□□□ -1.46
ATXN3-223	ENST00000553686	DEFB133	Q30KQ1	61 aa		5.95	□□□□□ -1.46
ATXN3-223	ENST00000553686	RBM20	Q5T481	1227 aa	Known RBP	5.95	□□□□□ -1.46
ATXN3-223	ENST00000553686	C9orf64	Q5T6V5	341 aa		5.95	□□□□□ -1.46
ATXN3-223	ENST00000553686	FAM46C	Q5VWP2	391 aa		5.95	□□□□□ -1.46
ATXN3-223	ENST00000553686	ADIPOR2	Q86V24	386 aa		5.95	□□□□□ -1.46
ATXN3-223	ENST00000553686	CACNA2D3	Q8IZS8	1091 aa		5.95	□□□□□ -1.46
ATXN3-223	ENST00000553686	DDX51	Q8N8A6	666 aa	Known RBP eCLIP	5.95	□□□□□ -1.46
ATXN3-223	ENST00000553686	ZNF548	Q8NEK5	533 aa	Predicted RBP	5.95	□□□□□ -1.46
ATXN3-223	ENST00000553686	OR6C4	Q8NGE1	309 aa		5.95	□□□□□ -1.46
ATXN3-223	ENST00000553686	SLC35G2	Q8TBE7	412 aa		5.95	□□□□□ -1.46
ATXN3-223	ENST00000553686	MTFMT	Q96DP5	389 aa	Known RBP	5.95	□□□□□ -1.46
ATXN3-223	ENST00000553686	TMA16	Q96EY4	203 aa	Known RBP	5.95	□□□□□ -1.46
ATXN3-223	ENST00000553686	LURAP1	Q96LR2	239 aa		5.95	□□□□□ -1.46
ATXN3-223	ENST00000553686	B3GNT5	Q9BYG0	378 aa		5.95	□□□□□ -1.46
ATXN3-223	ENST00000553686	SPAST	Q9UBP0	616 aa		5.95	□□□□□ -1.46
ATXN3-223	ENST00000553686	AGO1	Q9UL18	857 aa	Known RBP	5.95	□□□□□ -1.46
ATXN3-223	ENST00000553686	STYXL1	Q9Y6J8	313 aa		5.95	□□□□□ -1.46
ATXN3-223	ENST00000553686		A0A088AWK7	358 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	EDDM13	A0A1B0GTR0	161 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686		A8MXQ7	604 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	VWC2L	B2RUY7	222 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	TCP11X1	B4DZS4	312 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686		K7ENM7	598 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	CLDN5	O00501	218 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	SLC31A1	O15431	190 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	PLRG1	O43660	514 aa	Known RBP	5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	RFPL1	O75677	317 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	LDHA	P00338	332 aa	Known RBP	5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	IL1B	P01584	269 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	ANXA6	P08133	673 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	ELFN1	P0C7U0	828 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	PRKAR1A	P10644	381 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	CD1E	P15812	388 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	HNRNPA2B1	P22626	353 aa	Known RBP	5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	PSMD8	P48556	350 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	CDC20	Q12834	499 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	INPP5J	Q15735	1006 aa	Predicted RBP	5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	ZNF542P	Q5EBM4	170 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	ZRANB3	Q5FWF4	1079 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	NEK5	Q6P3R8	708 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686		Q6ZSR6	202 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	DENND1C	Q8IV53	801 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	AADAT	Q8N5Z0	425 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	MYCT1	Q8N699	235 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	LMX1A	Q8TE12	382 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	POMGNT1	Q8WZA1	660 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	SMARCD1	Q96GM5	515 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	ZNF764	Q96H86	408 aa	Predicted RBP	5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	ANKRD36BP1	Q96IX9	119 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	TNIP3	Q96KP6	325 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	TAAR9	Q96RI9	348 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	ACTRT3	Q9BYD9	372 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	KLK15	Q9H2R5	256 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	GPN2	Q9H9Y4	310 aa	Predicted RBP	5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	TMEM30A	Q9NV96	361 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	MTPAP	Q9NVV4	582 aa	Known RBP eCLIP	5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	SCML2	Q9UQR0	700 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	CA5B	Q9Y2D0	317 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	SPEN	Q96T58	3664 aa	Known RBP	5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	MYO16	Q9Y6X6	1858 aa		5.94	□□□□□ -1.46
ATXN3-223	ENST00000553686	APC	P25054	2843 aa		5.93	□□□□□ -1.46
ATXN3-223	ENST00000553686	CEP192	Q8TEP8	1941 aa		5.93	□□□□□ -1.46
ATXN3-223	ENST00000553686	CELSR1	Q9NYQ6	3014 aa		5.93	□□□□□ -1.46
ATXN3-223	ENST00000553686	SPTY2D1-AS1	A0A0U1RR47	76 aa		5.93	□□□□□ -1.46
ATXN3-223	ENST00000553686		A6NNZ2	444 aa		5.93	□□□□□ -1.46
ATXN3-223	ENST00000553686	ANKRD63	C9JTQ0	380 aa		5.93	□□□□□ -1.46
ATXN3-223	ENST00000553686	DNAJB5	O75953	348 aa		5.93	□□□□□ -1.46
ATXN3-223	ENST00000553686	NADK	O95544	446 aa	Predicted RBP	5.93	□□□□□ -1.46
ATXN3-223	ENST00000553686	TNNC2	P02585	160 aa		5.93	□□□□□ -1.46
ATXN3-223	ENST00000553686	RPLP0	P05388	317 aa	Known RBP	5.93	□□□□□ -1.46
ATXN3-223	ENST00000553686	PIM1	P11309	404 aa	Predicted RBP	5.93	□□□□□ -1.46
ATXN3-223	ENST00000553686	TCN2	P20062	427 aa		5.93	□□□□□ -1.46
ATXN3-223	ENST00000553686	CAPN3	P20807	821 aa		5.93	□□□□□ -1.46
ATXN3-223	ENST00000553686	ITGA3	P26006	1051 aa		5.93	□□□□□ -1.46
ATXN3-223	ENST00000553686	HTR1B	P28222	390 aa		5.93	□□□□□ -1.46
ATXN3-223	ENST00000553686	HOXD9	P28356	352 aa	Predicted RBP	5.93	□□□□□ -1.46
ATXN3-223	ENST00000553686	PTGER4	P35408	488 aa		5.93	□□□□□ -1.46
ATXN3-223	ENST00000553686	UGT1A3	P35503	534 aa		5.93	□□□□□ -1.46
ATXN3-223	ENST00000553686	NNMT	P40261	264 aa		5.93	□□□□□ -1.46
ATXN3-223	ENST00000553686	ETV5	P41161	510 aa		5.93	□□□□□ -1.46
ATXN3-223	ENST00000553686	PGF	P49763	221 aa		5.93	□□□□□ -1.46
ATXN3-223	ENST00000553686	HDAC4	P56524	1084 aa		5.93	□□□□□ -1.46
ATXN3-223	ENST00000553686	CCL7	P80098	99 aa		5.93	□□□□□ -1.46
ATXN3-223	ENST00000553686	GTF2B	Q00403	316 aa		5.93	□□□□□ -1.46
ATXN3-223	ENST00000553686	ZFP36L1	Q07352	338 aa	Known RBP	5.93	□□□□□ -1.46
ATXN3-223	ENST00000553686	ELAVL3	Q14576	367 aa	Known RBP	5.93	□□□□□ -1.46
ATXN3-223	ENST00000553686	DRAP1	Q14919	205 aa	Predicted RBP	5.93	□□□□□ -1.46
ATXN3-223	ENST00000553686	SMTNL2	Q2TAL5	461 aa		5.93	□□□□□ -1.46
ATXN3-223	ENST00000553686	MPP7	Q5T2T1	576 aa		5.93	□□□□□ -1.46

Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms