RNA–Protein interactions for RNA: ENST00000553039.1

CKAP4-203, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 4

Gene CKAP4, Length 573 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-203ENST00000553039 SEC14L3Q9UDX4 400 aa5.07□□□□□ -1.6
CKAP4-203ENST00000553039 KCNN3Q9UGI6 736 aa5.07□□□□□ -1.6
CKAP4-203ENST00000553039 HIF3AQ9Y2N7 669 aa5.07□□□□□ -1.6
CKAP4-203ENST00000553039 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.07□□□□□ -1.6
CKAP4-203ENST00000553039 PCDHB4Q9Y5E5 795 aa5.07□□□□□ -1.6
CKAP4-203ENST00000553039 MDC1Q14676 2089 aaKnown RBP5.07□□□□□ -1.6
CKAP4-203ENST00000553039 CSMD2Q7Z408 3487 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 FER1L5A0AVI2 2057 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 TSPAN11A1L157 253 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 PRAMEF27A3QJZ7 478 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 SLC9B1P1A6NJY1 282 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 CLEC3AO75596 197 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 PPM1BO75688 479 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 UNC5CO95185 931 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 MLYCDO95822 493 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 IFNA2P01563 188 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 JCHAINP01591 159 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 HBQ1P09105 142 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 F3P13726 295 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 TYRP1P17643 537 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 OTX2P32243 289 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 MMP12P39900 470 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 HTR3AP46098 478 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 POLD2P49005 469 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 MAPKAPK2P49137 400 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 MXI1P50539 228 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 SCNN1BP51168 640 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 ETF1P62495 437 aaKnown RBP5.06□□□□□ -1.6
CKAP4-203ENST00000553039 TUBB4BP68371 445 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 HSD11B2P80365 405 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 TMPRSS15P98073 1019 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 CDK3Q00526 305 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 DMPKQ09013 629 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 CETN1Q12798 172 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 TUBB2AQ13885 445 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 PYCR3Q53H96 274 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 PLEKHS1Q5SXH7 462 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 ZBTB37Q5TC79 503 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 ZNF324BQ6AW86 544 aaPredicted RBP5.06□□□□□ -1.6
CKAP4-203ENST00000553039 DUS1LQ6P1R4 473 aaKnown RBP5.06□□□□□ -1.6
CKAP4-203ENST00000553039 IGFL2Q6UWQ7 119 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 TMEM26Q6ZUK4 368 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 TRIM48Q8IWZ4 208 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 RBM12BQ8IXT5 1001 aaKnown RBP5.06□□□□□ -1.6
CKAP4-203ENST00000553039 DNAAF3Q8N9W5 541 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 ADAMTS18Q8TE60 1221 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 NR4A3Q92570 626 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 GTPBP3Q969Y2 492 aaKnown RBP5.06□□□□□ -1.6
CKAP4-203ENST00000553039 PTERQ96BW5 349 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 CLIP3Q96DZ5 547 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 WDR89Q96FK6 387 aaPredicted RBP5.06□□□□□ -1.6
CKAP4-203ENST00000553039 ZNF514Q96K75 400 aaPredicted RBP5.06□□□□□ -1.6
CKAP4-203ENST00000553039 CLIC6Q96NY7 704 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 SLC2A13Q96QE2 648 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 TUBGCP5Q96RT8 1024 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 TREX2Q9BQ50 279 aaPredicted RBP5.06□□□□□ -1.6
CKAP4-203ENST00000553039 TUBB2BQ9BVA1 445 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 TBC1D10AQ9BXI6 508 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 SLC7A5P2Q9GIP4 190 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 RAB33BQ9H082 229 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 MAGEF1Q9HAY2 307 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 SYTL2Q9HCH5 934 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 LUC7LQ9NQ29 371 aaKnown RBP5.06□□□□□ -1.6
CKAP4-203ENST00000553039 PPARGC1AQ9UBK2 798 aaKnown RBP5.06□□□□□ -1.6
CKAP4-203ENST00000553039 SERTAD3Q9UJW9 196 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 FBXO2Q9UK22 296 aaPredicted RBP5.06□□□□□ -1.6
CKAP4-203ENST00000553039 STAP1Q9ULZ2 295 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 TRAF3IP3Q9Y228 551 aa5.06□□□□□ -1.6
CKAP4-203ENST00000553039 A0A1W2PQ67 120 aa5.05□□□□□ -1.6
CKAP4-203ENST00000553039 UBA6A0AVT1 1052 aaPredicted RBP5.05□□□□□ -1.6
CKAP4-203ENST00000553039 DYTNA2CJ06 578 aa5.05□□□□□ -1.6
CKAP4-203ENST00000553039 IDSB3KWA1 339 aa5.05□□□□□ -1.6
CKAP4-203ENST00000553039 SHOXO15266 292 aa5.05□□□□□ -1.6
CKAP4-203ENST00000553039 TBX1O43435 398 aa5.05□□□□□ -1.6
CKAP4-203ENST00000553039 LDB2O43679 373 aa5.05□□□□□ -1.6
CKAP4-203ENST00000553039 SNX2O60749 519 aa5.05□□□□□ -1.6
CKAP4-203ENST00000553039 SLC19A2O60779 497 aa5.05□□□□□ -1.6
CKAP4-203ENST00000553039 RAMP2O60895 175 aa5.05□□□□□ -1.6
CKAP4-203ENST00000553039 TMCC1O94876 653 aa5.05□□□□□ -1.6
CKAP4-203ENST00000553039 TIAF1O95411 115 aa5.05□□□□□ -1.6
CKAP4-203ENST00000553039 TP53P04637 393 aaPredicted RBP5.05□□□□□ -1.6
CKAP4-203ENST00000553039 SCG5P05408 212 aa5.05□□□□□ -1.6
CKAP4-203ENST00000553039 CTSBP07858 339 aa5.05□□□□□ -1.6
CKAP4-203ENST00000553039 FOLR1P15328 257 aa5.05□□□□□ -1.6
CKAP4-203ENST00000553039 IDSP22304 550 aa5.05□□□□□ -1.6
CKAP4-203ENST00000553039 NR2F2P24468 414 aa5.05□□□□□ -1.6
CKAP4-203ENST00000553039 PCSK6P29122 969 aa5.05□□□□□ -1.6
CKAP4-203ENST00000553039 SERPINA4P29622 427 aa5.05□□□□□ -1.6
CKAP4-203ENST00000553039 HOXC12P31275 282 aa5.05□□□□□ -1.6
CKAP4-203ENST00000553039 NTF4P34130 210 aa5.05□□□□□ -1.6
CKAP4-203ENST00000553039 SPAM1P38567 509 aa5.05□□□□□ -1.6
CKAP4-203ENST00000553039 GPR1P46091 355 aa5.05□□□□□ -1.6
CKAP4-203ENST00000553039 CSNK1DP48730 415 aa5.05□□□□□ -1.6
CKAP4-203ENST00000553039 GFERP55789 205 aa5.05□□□□□ -1.6
CKAP4-203ENST00000553039 GFRA1P56159 465 aa5.05□□□□□ -1.6
CKAP4-203ENST00000553039 PITX1P78337 314 aaPredicted RBP5.05□□□□□ -1.6
CKAP4-203ENST00000553039 ADORA2A-AS1P86434 159 aa5.05□□□□□ -1.6
CKAP4-203ENST00000553039 BECN1Q14457 450 aa5.05□□□□□ -1.6
CKAP4-203ENST00000553039 INAQ16352 499 aa5.05□□□□□ -1.6
CKAP4-203ENST00000553039 MEA1Q16626 185 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms