RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 PDLIM5Q96HC4 596 aaKnown RBP13.54□□□□□ -0.24
VPS33A-208ENST00000543633 RPRD1AQ96P16 312 aaPredicted RBP13.54□□□□□ -0.24
VPS33A-208ENST00000543633 ZNF347Q96SE7 839 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 LHPPQ9H008 270 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 TOR3AQ9H497 397 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 SOX17Q9H6I2 414 aaPredicted RBP13.54□□□□□ -0.24
VPS33A-208ENST00000543633 FAM118AQ9NWS6 357 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 ITGB1BP2Q9UKP3 347 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 PDE10AQ9Y233 779 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 FAM50BQ9Y247 325 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 BPTFQ12830 3046 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 TMEM221A6NGB7 291 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 C2orf81A6NN90 581 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 G3V2T6 193 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 BOLA2-SMG1P6H3BVE0 249 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 TMEM189-UBE2V1I3L0A0 370 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 MGEA5O60502 916 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 AOC2O75106 756 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 SERPINB7O75635 380 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 OR4F21O95013 312 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 SCELO95171 688 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 OAZ2O95190 189 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 OR1E1P30953 314 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 CASP2P42575 452 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 MTHFRP42898 656 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 AGTR2P50052 363 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 PPP2R2BQ00005 443 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 MAD2L1Q13257 205 aaPredicted RBP13.54□□□□□ -0.24
VPS33A-208ENST00000543633 PTPRCAPQ14761 206 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 ZNF846Q147U1 533 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 CCL14Q16627 93 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 PTPRNQ16849 979 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 ZC3H12BQ5HYM0 836 aaKnown RBP13.54□□□□□ -0.24
VPS33A-208ENST00000543633 SULT1C3Q6IMI6 304 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 CYP20A1Q6UW02 462 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 FRA10AC1Q70Z53 315 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 GLT6D1Q7Z4J2 308 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 R3HCC1LQ7Z5L2 792 aaKnown RBP13.54□□□□□ -0.24
VPS33A-208ENST00000543633 NECAB2Q7Z6G3 386 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 FAM126BQ8IXS8 530 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 CPNE9Q8IYJ1 553 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 GLB1L3Q8NCI6 653 aaPredicted RBP13.54□□□□□ -0.24
VPS33A-208ENST00000543633 CHDHQ8NE62 594 aaPredicted RBP13.54□□□□□ -0.24
VPS33A-208ENST00000543633 FKBP10Q96AY3 582 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 PPP3R2Q96LZ3 170 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 PSKH2Q96QS6 385 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 ZBTB18Q99592 522 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 SH3GL1Q99961 368 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 WDR12Q9GZL7 423 aaKnown RBP13.54□□□□□ -0.24
VPS33A-208ENST00000543633 MAGEH1Q9H213 219 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 CD274Q9NZQ7 290 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 SLAMF8Q9P0V8 285 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 EIF2B4Q9UI10 523 aaKnown RBP13.54□□□□□ -0.24
VPS33A-208ENST00000543633 ENPP5Q9UJA9 477 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 WDR37Q9Y2I8 494 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 ZNF711Q9Y462 761 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 NEUROG3Q9Y4Z2 214 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 PCDHGB1Q9Y5G3 927 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 K7EPI3 171 aa13.53□□□□□ -0.24
VPS33A-208ENST00000543633 KPNA4O00629 521 aaPredicted RBP13.53□□□□□ -0.24
VPS33A-208ENST00000543633 LSM1O15116 133 aaKnown RBP13.53□□□□□ -0.24
VPS33A-208ENST00000543633 RSL1D1O76021 490 aaKnown RBP13.53□□□□□ -0.24
VPS33A-208ENST00000543633 MT-ND1P03886 318 aa13.53□□□□□ -0.24
VPS33A-208ENST00000543633 CCDC159P0C7I6 412 aa13.53□□□□□ -0.24
VPS33A-208ENST00000543633 ACVRL1P37023 503 aa13.53□□□□□ -0.24
VPS33A-208ENST00000543633 KPNA1P52294 538 aaPredicted RBP13.53□□□□□ -0.24
VPS33A-208ENST00000543633 HK3P52790 923 aa13.53□□□□□ -0.24
VPS33A-208ENST00000543633 PLA2G16P53816 162 aa13.53□□□□□ -0.24
VPS33A-208ENST00000543633 EFEMP1Q12805 493 aa13.53□□□□□ -0.24
VPS33A-208ENST00000543633 NEK10Q6ZWH5 1172 aa13.53□□□□□ -0.24
VPS33A-208ENST00000543633 ADAMTSL2Q86TH1 951 aa13.53□□□□□ -0.24
VPS33A-208ENST00000543633 ANKRD13BQ86YJ7 626 aa13.53□□□□□ -0.24
VPS33A-208ENST00000543633 STK40Q8N2I9 435 aa13.53□□□□□ -0.24
VPS33A-208ENST00000543633 PARP8Q8N3A8 854 aa13.53□□□□□ -0.24
VPS33A-208ENST00000543633 SLC15A4Q8N697 577 aa13.53□□□□□ -0.24
VPS33A-208ENST00000543633 PIK3C3Q8NEB9 887 aa13.53□□□□□ -0.24
VPS33A-208ENST00000543633 ZNF548Q8NEK5 533 aaPredicted RBP13.53□□□□□ -0.24
VPS33A-208ENST00000543633 PDZD8Q8NEN9 1154 aa13.53□□□□□ -0.24
VPS33A-208ENST00000543633 OR2T12Q8NG77 320 aa13.53□□□□□ -0.24
VPS33A-208ENST00000543633 OR4K2Q8NGD2 314 aa13.53□□□□□ -0.24
VPS33A-208ENST00000543633 CD200R1Q8TD46 325 aa13.53□□□□□ -0.24
VPS33A-208ENST00000543633 HASPINQ8TF76 798 aa13.53□□□□□ -0.24
VPS33A-208ENST00000543633 SOCS4Q8WXH5 440 aa13.53□□□□□ -0.24
VPS33A-208ENST00000543633 ZNF583Q96ND8 569 aa13.53□□□□□ -0.24
VPS33A-208ENST00000543633 MBOAT4Q96T53 435 aa13.53□□□□□ -0.24
VPS33A-208ENST00000543633 ACTL8Q9H568 366 aa13.53□□□□□ -0.24
VPS33A-208ENST00000543633 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.53□□□□□ -0.24
VPS33A-208ENST00000543633 ASIC5Q9NY37 505 aa13.53□□□□□ -0.24
VPS33A-208ENST00000543633 ABI2Q9NYB9 513 aaPredicted RBP13.53□□□□□ -0.24
VPS33A-208ENST00000543633 USP22Q9UPT9 525 aa13.53□□□□□ -0.24
VPS33A-208ENST00000543633 SNX5Q9Y5X3 404 aa13.53□□□□□ -0.24
VPS33A-208ENST00000543633 MRPL42Q9Y6G3 142 aaKnown RBP13.53□□□□□ -0.24
VPS33A-208ENST00000543633 HTTP42858 3142 aa13.53□□□□□ -0.24
VPS33A-208ENST00000543633 GOLGA8CPA6NN73 597 aa13.52□□□□□ -0.24
VPS33A-208ENST00000543633 H7C0S8 307 aa13.52□□□□□ -0.24
VPS33A-208ENST00000543633 ALDH1A1P00352 501 aa13.52□□□□□ -0.24
VPS33A-208ENST00000543633 ESR1P03372 595 aa13.52□□□□□ -0.24
VPS33A-208ENST00000543633 FUCA1P04066 466 aa13.52□□□□□ -0.24
VPS33A-208ENST00000543633 RETP07949 1114 aa13.52□□□□□ -0.24
VPS33A-208ENST00000543633 TFPTP0C1Z6 253 aa13.52□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms