RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 ADAMTS5Q9UNA0 930 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 PRR5-ARHGAP8B1AHC4 643 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 PLIN3O60664 434 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 CNTN5O94779 1100 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 HLA-EP13747 358 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 ALDH4A1P30038 563 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 ARHGAP8P85298 464 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 OGDHQ02218 1023 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 NEDD8Q15843 81 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 NEK10Q6ZWH5 1172 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 CENPIQ92674 756 aaPredicted RBP13.93□□□□□ -0.18
USP3-204ENST00000540797 ESAMQ96AP7 390 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 SLC22A18Q96BI1 424 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 TBC1D10AQ9BXI6 508 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 PRMT3O60678 531 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 ZNF30P17039 623 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 MASP1P48740 699 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 ANO7Q6IWH7 933 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 NKX2-4Q9H2Z4 354 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 TRPS1Q9UHF7 1281 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 TELO2Q9Y4R8 837 aa13.93□□□□□ -0.18
USP3-204ENST00000540797 RBM47A0AV96 593 aaKnown RBP13.92□□□□□ -0.18
USP3-204ENST00000540797 CLDN7O95471 211 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 SLC25A11Q02978 314 aaKnown RBP13.92□□□□□ -0.18
USP3-204ENST00000540797 TTC23Q5W5X9 447 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 FAM46DQ8NEK8 389 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 ZBED3Q96IU2 234 aaPredicted RBP13.92□□□□□ -0.18
USP3-204ENST00000540797 RPRD1BQ9NQG5 326 aaKnown RBP13.92□□□□□ -0.18
USP3-204ENST00000540797 MYH2Q9UKX2 1941 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 SMIM31A0A1B0GVY4 71 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 B3GALT2O43825 422 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 PAFAH1B3Q15102 231 aaKnown RBP13.92□□□□□ -0.18
USP3-204ENST00000540797 RALGPS1Q5JS13 557 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 SLC30A9Q6PML9 568 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 FAM220AQ7Z4H9 259 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 PPM1MQ96MI6 270 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 CLN6Q9NWW5 311 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 SEC14L3Q9UDX4 400 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 MAGEL2Q9UJ55 1249 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 C3orf18Q9UK00 162 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 CNTN6Q9UQ52 1028 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 GMPPBQ9Y5P6 360 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 KDM3BQ7LBC6 1761 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 ANKRD66B4E2M5 251 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 TIMP1P01033 207 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 AQP1P29972 269 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 PLA2G16P53816 162 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 KLF10Q13118 480 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 ZIK1Q3SY52 487 aaPredicted RBP13.92□□□□□ -0.18
USP3-204ENST00000540797 NAPRTQ6XQN6 538 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 ULK2Q8IYT8 1036 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 DNASE1L2Q92874 299 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 HBEGFQ99075 208 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 MIPEPQ99797 713 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 CCM2Q9BSQ5 444 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 RTKNQ9BST9 563 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 SERHL2Q9H4I8 314 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 VRTNQ9H8Y1 702 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 SERHLQ9NQF3 203 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 PRPF19Q9UMS4 504 aaKnown RBP13.92□□□□□ -0.18
USP3-204ENST00000540797 PRKAB1Q9Y478 270 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 DHRS12A0PJE2 317 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 GJB5O95377 273 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 TNFAIP8O95379 198 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 TPRG1Q6ZUI0 275 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 SLC47A1Q96FL8 570 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 TEFMQ96QE5 360 aaKnown RBP13.92□□□□□ -0.18
USP3-204ENST00000540797 MTRRQ9UBK8 725 aa13.92□□□□□ -0.18
USP3-204ENST00000540797 DNAJC25-GNG10A0A024R161 153 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 IGKV6D-21A0A0A0MT36 114 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 NIPSNAP2O75323 286 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 BEND5Q7L4P6 421 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 FBXW8Q8N3Y1 598 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 C7orf26Q96N11 449 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 P2RY13Q9BPV8 354 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 EBPLQ9BY08 206 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 XYLT2Q9H1B5 865 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 IKZF3Q9UKT9 509 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 IL6P05231 212 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 DLDP09622 509 aaKnown RBP13.91□□□□□ -0.18
USP3-204ENST00000540797 BMPR1AP36894 532 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 TM4SF4P48230 202 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 C1QTNF8P60827 252 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 GALNT2Q10471 571 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 HEPACAMQ14CZ8 416 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.91□□□□□ -0.18
USP3-204ENST00000540797 VANGL1Q8TAA9 524 aaPredicted RBP13.91□□□□□ -0.18
USP3-204ENST00000540797 Q96MT0 163 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 GRHL1Q9NZI5 618 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 MAP4K5Q9Y4K4 846 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 IGKV6-21A0A0C4DH24 114 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 TEX28O15482 410 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 PRAMEF11O60813 436 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 ZNF8P17098 575 aaPredicted RBP13.91□□□□□ -0.18
USP3-204ENST00000540797 GRIA1P42261 906 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 CTSOP43234 321 aaPredicted RBP13.91□□□□□ -0.18
USP3-204ENST00000540797 LARS2Q15031 903 aaKnown RBP13.91□□□□□ -0.18
USP3-204ENST00000540797 TDRPQ86YL5 185 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 TEX47Q8TBZ9 253 aa13.91□□□□□ -0.18
USP3-204ENST00000540797 GAL3ST4Q96RP7 486 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms