RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 TRBV23-1A0A0A0MS06 115 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 EFCAB9A8MZ26 197 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 GNB5O14775 395 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 KHNYNO15037 678 aaKnown RBP9.35□□□□□ -0.91
CLIP1-214ENST00000540539 PMPCBO75439 489 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 PROSCO94903 275 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 HSPA4LO95757 839 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 RPL22P35268 128 aaKnown RBP9.35□□□□□ -0.91
CLIP1-214ENST00000540539 GRK1Q15835 563 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 HKDC1Q2TB90 917 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 PTCHD3Q3KNS1 767 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 ATP13A4Q4VNC1 1196 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 PITRM1Q5JRX3 1037 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 STXBP5Q5T5C0 1151 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 NBPF12Q5TAG4 269 aaPredicted RBP9.35□□□□□ -0.91
CLIP1-214ENST00000540539 LAIR2Q6ISS4 152 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 ZNF782Q6ZMW2 699 aaPredicted RBP9.35□□□□□ -0.91
CLIP1-214ENST00000540539 GALNT10Q86SR1 603 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 TBC1D19Q8N5T2 526 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 SETD6Q8TBK2 473 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 DDX1Q92499 740 aaKnown RBP9.35□□□□□ -0.91
CLIP1-214ENST00000540539 USP7Q93009 1102 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.35□□□□□ -0.91
CLIP1-214ENST00000540539 PPIL3Q9H2H8 161 aaKnown RBP9.35□□□□□ -0.91
CLIP1-214ENST00000540539 NMUR1Q9HB89 426 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 LTB4R2Q9NPC1 389 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 ERVK13-1Q9NX77 482 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 MKLN1Q9UL63 735 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 ZFR2Q9UPR6 939 aaKnown RBP9.35□□□□□ -0.91
CLIP1-214ENST00000540539 PCDHGB2Q9Y5G2 931 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 PPP2R3BQ9Y5P8 575 aa9.35□□□□□ -0.91
CLIP1-214ENST00000540539 E2F8A0AVK6 867 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 CCDC78A2IDD5 438 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 EIF1BO60739 113 aaKnown RBP9.34□□□□□ -0.91
CLIP1-214ENST00000540539 UGT2B17O75795 530 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 HBQ1P09105 142 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 RPS3P23396 243 aaKnown RBP eCLIP9.34□□□□□ -0.91
CLIP1-214ENST00000540539 ACSL1P33121 698 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 EIF1P41567 113 aaKnown RBP9.34□□□□□ -0.91
CLIP1-214ENST00000540539 UGT2B15P54855 530 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 PDK2Q15119 407 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 SMAD2Q15796 467 aaKnown RBP9.34□□□□□ -0.91
CLIP1-214ENST00000540539 CYP27C1Q4G0S4 372 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 PTPN20Q4JDL3 420 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 SAMD4BQ5PRF9 694 aaKnown RBP9.34□□□□□ -0.91
CLIP1-214ENST00000540539 OR7E24Q6IFN5 339 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 MFSD7Q6UXD7 560 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 ADGRF4Q8IZF3 695 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 C8orf59Q8N0T1 100 aaPredicted RBP9.34□□□□□ -0.91
CLIP1-214ENST00000540539 HEXDCQ8WVB3 486 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 TRMT2BQ96GJ1 504 aaKnown RBP9.34□□□□□ -0.91
CLIP1-214ENST00000540539 VPS39Q96JC1 886 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 ARL5BQ96KC2 179 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 TMEM68Q96MH6 324 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 C1QTNF6Q9BXI9 259 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 FAM83DQ9H4H8 585 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 PLAC1Q9HBJ0 212 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 POLE3Q9NRF9 147 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 IL17RBQ9NRM6 502 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 CACNA2D2Q9NY47 1150 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 KIAA1024Q9UPX6 916 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 SLC12A8A0AV02 714 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 ADM5C9JUS6 153 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 TGFB1I1O43294 461 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 SOAT2O75908 522 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 AHSGP02765 367 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 SUPT20HL2P0C7V6 817 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 FCGR1AP12314 374 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 APEHP13798 732 aaKnown RBP9.34□□□□□ -0.91
CLIP1-214ENST00000540539 SLC2A4P14672 509 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 JUPP14923 745 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 PRKCHP24723 683 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 MYL9P24844 172 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 PSMB9P28065 219 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 BMP8BP34820 402 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 MAP2K4P45985 399 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 BRCC3P46736 316 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 CLCNKAP51800 687 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 RBP5P82980 135 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 MAP2K5Q13163 448 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 ADAM15Q13444 863 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 OTUD3Q5T2D3 398 aaPredicted RBP9.34□□□□□ -0.91
CLIP1-214ENST00000540539 ACAD10Q6JQN1 1059 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 DLK2Q6UY11 383 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 NAPRTQ6XQN6 538 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 TRILQ7L0X0 811 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 BMP8AQ7Z5Y6 402 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 GPR142Q7Z601 462 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 SPPL2CQ8IUH8 684 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 NKAIN4Q8IVV8 208 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 OR8H2Q8N162 312 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 C3orf58Q8NDZ4 430 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 TRPV3Q8NET8 790 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 NANPQ8TBE9 248 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 MYDGFQ969H8 173 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 MYRFLQ96LU7 910 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 SLITRK1Q96PX8 696 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 CCDC32Q9BV29 185 aa9.34□□□□□ -0.91
CLIP1-214ENST00000540539 NXF2Q9GZY0 626 aaKnown RBP9.34□□□□□ -0.91
CLIP1-214ENST00000540539 KAT8Q9H7Z6 458 aaKnown RBP9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms