RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 CLSTN3Q9BQT9 956 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 CLPBQ9H078 707 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 CLK4Q9HAZ1 481 aaKnown RBP12.98□□□□□ -0.33
LDLR-203ENST00000535915 HMX1Q9NP08 348 aaPredicted RBP12.98□□□□□ -0.33
LDLR-203ENST00000535915 THEGQ9P2T0 379 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 USP22Q9UPT9 525 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 TNPO3Q9Y5L0 923 aaKnown RBP12.98□□□□□ -0.33
LDLR-203ENST00000535915 BACE2Q9Y5Z0 518 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 FZD6O60353 706 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 GUCA1CO95843 209 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 CNPP09543 421 aaKnown RBP12.97□□□□□ -0.33
LDLR-203ENST00000535915 SMAD3P84022 425 aaKnown RBP12.97□□□□□ -0.33
LDLR-203ENST00000535915 GTF2H2Q13888 395 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 NR6A1Q15406 480 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 ARMC12Q5T9G4 340 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 GTF2H2CQ6P1K8 395 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 BORAQ6PGQ7 559 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 SBSNQ6UWP8 590 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 SERPINA9Q86WD7 417 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 ZFAND4Q86XD8 727 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 FIBCD1Q8N539 461 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 ZNF461Q8TAF7 563 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 MYO19Q96H55 970 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 PDLIM5Q96HC4 596 aaKnown RBP12.97□□□□□ -0.33
LDLR-203ENST00000535915 SCLYQ96I15 445 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 HIC2Q96JB3 615 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 ADI1Q9BV57 179 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 VN1R3Q9BXE9 311 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 MAGEE1Q9HCI5 957 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 RHBDL2Q9NX52 303 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 VPS51Q9UID3 782 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 ANAPC2Q9UJX6 822 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 V9GYQ6 96 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 TCRBV5S2A0A599 114 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 DLGAP1O14490 977 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 OR7A17O14581 309 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 FFAR2O15552 330 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 AOC2O75106 756 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 PRAMEF1O95521 474 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 G6PDP11413 515 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 ZNF7P17097 686 aaPredicted RBP12.97□□□□□ -0.33
LDLR-203ENST00000535915 CSKP41240 450 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 MERTKQ12866 999 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 PCBP2Q15366 365 aaKnown RBP eCLIP12.97□□□□□ -0.338e-6■■■■□ 24
LDLR-203ENST00000535915 ATP6AP1Q15904 470 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 CERS6Q6ZMG9 384 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 FAM126BQ8IXS8 530 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 SEPHS2Q99611 448 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 BOCQ9BWV1 1114 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 DDX18Q9NVP1 670 aaKnown RBP12.97□□□□□ -0.33
LDLR-203ENST00000535915 ZMYM5Q9UJ78 669 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 SLC8A2Q9UPR5 921 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 YIPF1Q9Y548 306 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 CEPT1Q9Y6K0 416 aa12.97□□□□□ -0.33
LDLR-203ENST00000535915 LAMA2P24043 3122 aaKnown RBP12.96□□□□□ -0.33
LDLR-203ENST00000535915 hCG_2014768A0A024R1R8 64 aa12.96□□□□□ -0.33
LDLR-203ENST00000535915 KANSL1LA0AUZ9 987 aa12.96□□□□□ -0.33
LDLR-203ENST00000535915 K7ERQ8 282 aa12.96□□□□□ -0.33
LDLR-203ENST00000535915 RAD51BO15315 384 aa12.96□□□□□ -0.33
LDLR-203ENST00000535915 ENO2P09104 434 aaPredicted RBP12.96□□□□□ -0.33
LDLR-203ENST00000535915 UMPSP11172 480 aa12.96□□□□□ -0.33
LDLR-203ENST00000535915 RPL10P27635 214 aaKnown RBP12.96□□□□□ -0.33
LDLR-203ENST00000535915 HMOX2P30519 316 aa12.96□□□□□ -0.33
LDLR-203ENST00000535915 CDH15P55291 814 aa12.96□□□□□ -0.33
LDLR-203ENST00000535915 EMX2Q04743 252 aa12.96□□□□□ -0.33
LDLR-203ENST00000535915 CDH18Q13634 790 aa12.96□□□□□ -0.33
LDLR-203ENST00000535915 VEPH1Q14D04 833 aa12.96□□□□□ -0.33
LDLR-203ENST00000535915 TMTC4Q5T4D3 741 aa12.96□□□□□ -0.33
LDLR-203ENST00000535915 HID1Q8IV36 788 aa12.96□□□□□ -0.33
LDLR-203ENST00000535915 ZNF786Q8N393 782 aa12.96□□□□□ -0.33
LDLR-203ENST00000535915 HM13Q8TCT9 377 aa12.96□□□□□ -0.33
LDLR-203ENST00000535915 LRRC3Q9BY71 257 aa12.96□□□□□ -0.33
LDLR-203ENST00000535915 NSUN3Q9H649 340 aaKnown RBP12.96□□□□□ -0.33
LDLR-203ENST00000535915 ASB8Q9H765 288 aa12.96□□□□□ -0.33
LDLR-203ENST00000535915 IPPKQ9H8X2 491 aa12.96□□□□□ -0.33
LDLR-203ENST00000535915 HEBP1Q9NRV9 189 aa12.96□□□□□ -0.33
LDLR-203ENST00000535915 MICAL3Q7RTP6 2002 aa12.96□□□□□ -0.33
LDLR-203ENST00000535915 EI24O14681 340 aa12.96□□□□□ -0.34
LDLR-203ENST00000535915 SEC24DO94855 1032 aaPredicted RBP12.96□□□□□ -0.34
LDLR-203ENST00000535915 PGLSO95336 258 aa12.96□□□□□ -0.34
LDLR-203ENST00000535915 OTCP00480 354 aa12.96□□□□□ -0.34
LDLR-203ENST00000535915 NPPAP01160 153 aa12.96□□□□□ -0.34
LDLR-203ENST00000535915 MT-ND1P03886 318 aa12.96□□□□□ -0.34
LDLR-203ENST00000535915 CDH2P19022 906 aaPredicted RBP12.96□□□□□ -0.34
LDLR-203ENST00000535915 RFC2P35250 354 aa12.96□□□□□ -0.34
LDLR-203ENST00000535915 HSPA7P48741 367 aa12.96□□□□□ -0.34
LDLR-203ENST00000535915 AP5B1Q2VPB7 878 aa12.96□□□□□ -0.34
LDLR-203ENST00000535915 TTC33Q6PID6 262 aaPredicted RBP12.96□□□□□ -0.34
LDLR-203ENST00000535915 CYP20A1Q6UW02 462 aa12.96□□□□□ -0.34
LDLR-203ENST00000535915 RALGPS2Q86X27 583 aaPredicted RBP12.96□□□□□ -0.34
LDLR-203ENST00000535915 TBC1D21Q8IYX1 336 aa12.96□□□□□ -0.34
LDLR-203ENST00000535915 CLDN19Q8N6F1 224 aa12.96□□□□□ -0.34
LDLR-203ENST00000535915 WFDC5Q8TCV5 224 aa12.96□□□□□ -0.34
LDLR-203ENST00000535915 CYGBQ8WWM9 190 aa12.96□□□□□ -0.34
LDLR-203ENST00000535915 TMIGD2Q96BF3 282 aa12.96□□□□□ -0.34
LDLR-203ENST00000535915 PPM1MQ96MI6 270 aa12.96□□□□□ -0.34
LDLR-203ENST00000535915 ZFYVE1Q9HBF4 777 aa12.96□□□□□ -0.34
LDLR-203ENST00000535915 POLR3HQ9Y535 204 aaPredicted RBP12.96□□□□□ -0.34
LDLR-203ENST00000535915 OBSL1O75147 1896 aa12.96□□□□□ -0.34
LDLR-203ENST00000535915 ZNF106Q9H2Y7 1883 aaKnown RBP12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms