RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 ACY1Q03154 408 aa11.1□□□□□ -0.63
VPS28-214ENST00000531032 KLRB1Q12918 225 aa11.1□□□□□ -0.63
VPS28-214ENST00000531032 UBAP2LQ14157 1087 aaKnown RBP11.1□□□□□ -0.63
VPS28-214ENST00000531032 NFE2L1Q14494 772 aa11.1□□□□□ -0.63
VPS28-214ENST00000531032 KCNAB1Q14722 419 aa11.1□□□□□ -0.63
VPS28-214ENST00000531032 LLGL1Q15334 1064 aa11.1□□□□□ -0.63
VPS28-214ENST00000531032 METRNLQ641Q3 311 aa11.1□□□□□ -0.63
VPS28-214ENST00000531032 PWWP2BQ6NUJ5 590 aa11.1□□□□□ -0.63
VPS28-214ENST00000531032 TMEM220Q6QAJ8 160 aa11.1□□□□□ -0.63
VPS28-214ENST00000531032 PID1Q7Z2X4 250 aa11.1□□□□□ -0.63
VPS28-214ENST00000531032 TMEM135Q86UB9 458 aa11.1□□□□□ -0.63
VPS28-214ENST00000531032 BPHLQ86WA6 291 aaPredicted RBP11.1□□□□□ -0.63
VPS28-214ENST00000531032 CNGA4Q8IV77 575 aa11.1□□□□□ -0.63
VPS28-214ENST00000531032 KATNAL2Q8IYT4 538 aa11.1□□□□□ -0.63
VPS28-214ENST00000531032 SIDT2Q8NBJ9 832 aaKnown RBP11.1□□□□□ -0.63
VPS28-214ENST00000531032 IPMKQ8NFU5 416 aa11.1□□□□□ -0.63
VPS28-214ENST00000531032 ZNF514Q96K75 400 aaPredicted RBP11.1□□□□□ -0.63
VPS28-214ENST00000531032 CD180Q99467 661 aa11.1□□□□□ -0.63
VPS28-214ENST00000531032 MAP3K3Q99759 626 aa11.1□□□□□ -0.63
VPS28-214ENST00000531032 FSD1LQ9BXM9 530 aa11.1□□□□□ -0.63
VPS28-214ENST00000531032 ANKMY1Q9P2S6 941 aa11.1□□□□□ -0.63
VPS28-214ENST00000531032 PSMD13Q9UNM6 376 aa11.1□□□□□ -0.63
VPS28-214ENST00000531032 ALG6Q9Y672 507 aa11.1□□□□□ -0.63
VPS28-214ENST00000531032 CDC14CA4D256 554 aa11.09□□□□□ -0.63
VPS28-214ENST00000531032 KLHL33A6NCF5 533 aa11.09□□□□□ -0.63
VPS28-214ENST00000531032 MGAT4DA6NG13 374 aa11.09□□□□□ -0.63
VPS28-214ENST00000531032 F5H423 210 aaPredicted RBP11.09□□□□□ -0.63
VPS28-214ENST00000531032 BUD23O43709 281 aaKnown RBP11.09□□□□□ -0.63
VPS28-214ENST00000531032 RFPL1O75677 317 aa11.09□□□□□ -0.63
VPS28-214ENST00000531032 PRAMEF1O95521 474 aa11.09□□□□□ -0.63
VPS28-214ENST00000531032 NR1D1P20393 614 aa11.09□□□□□ -0.63
VPS28-214ENST00000531032 CD97P48960 835 aa11.09□□□□□ -0.63
VPS28-214ENST00000531032 LAMB3Q13751 1172 aa11.09□□□□□ -0.63
VPS28-214ENST00000531032 PLCL1Q15111 1095 aa11.09□□□□□ -0.63
VPS28-214ENST00000531032 LONRF2Q1L5Z9 754 aa11.09□□□□□ -0.63
VPS28-214ENST00000531032 DNTTIP2Q5QJE6 756 aaKnown RBP11.09□□□□□ -0.63
VPS28-214ENST00000531032 FNBP1LQ5T0N5 605 aa11.09□□□□□ -0.63
VPS28-214ENST00000531032 APLFQ8IW19 511 aaPredicted RBP11.09□□□□□ -0.63
VPS28-214ENST00000531032 CARFQ8N187 725 aa11.09□□□□□ -0.63
VPS28-214ENST00000531032 D2HGDHQ8N465 521 aa11.09□□□□□ -0.63
VPS28-214ENST00000531032 ZFPM2Q8WW38 1151 aa11.09□□□□□ -0.63
VPS28-214ENST00000531032 SEC14L1Q92503 715 aa11.09□□□□□ -0.63
VPS28-214ENST00000531032 MIB2Q96AX9 1013 aa11.09□□□□□ -0.63
VPS28-214ENST00000531032 GORASP1Q9BQQ3 440 aa11.09□□□□□ -0.63
VPS28-214ENST00000531032 GPR87Q9BY21 358 aa11.09□□□□□ -0.63
VPS28-214ENST00000531032 TRIM5Q9C035 493 aa11.09□□□□□ -0.63
VPS28-214ENST00000531032 TWSG1Q9GZX9 223 aa11.09□□□□□ -0.63
VPS28-214ENST00000531032 GBA3Q9H227 469 aa11.09□□□□□ -0.63
VPS28-214ENST00000531032 GOLPH3Q9H4A6 298 aa11.09□□□□□ -0.63
VPS28-214ENST00000531032 ACTL8Q9H568 366 aa11.09□□□□□ -0.63
VPS28-214ENST00000531032 FGF21Q9NSA1 209 aa11.09□□□□□ -0.63
VPS28-214ENST00000531032 IMP3Q9NV31 184 aaKnown RBP11.09□□□□□ -0.63
VPS28-214ENST00000531032 RSPH14Q9UHP6 348 aa11.09□□□□□ -0.63
VPS28-214ENST00000531032 TLK1Q9UKI8 766 aa11.09□□□□□ -0.63
VPS28-214ENST00000531032 TRHDEQ9UKU6 1024 aa11.09□□□□□ -0.63
VPS28-214ENST00000531032 PIPSLA2A3N6 862 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 AKR1B15C9JRZ8 316 aaPredicted RBP11.08□□□□□ -0.64
VPS28-214ENST00000531032 STX7O15400 261 aaKnown RBP11.08□□□□□ -0.64
VPS28-214ENST00000531032 ZRANB2O95218 330 aaKnown RBP eCLIP11.08□□□□□ -0.642e-7■■□□□ 13.6
VPS28-214ENST00000531032 EBLN1P0CF75 366 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 MSH3P20585 1137 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 PTPN4P29074 926 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 PBLDP30039 288 aaPredicted RBP11.08□□□□□ -0.64
VPS28-214ENST00000531032 AKT1P31749 480 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 MARCKSL1P49006 195 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 TUBB4BP68371 445 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 HSD11B2P80365 405 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 XRCC4Q13426 336 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 SEMA5AQ13591 1074 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 TUBB2AQ13885 445 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 PTPRCAPQ14761 206 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 UGT8Q16880 541 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 BCL7AQ4VC05 210 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 CERS6Q6ZMG9 384 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 ZNF517Q6ZMY9 492 aaPredicted RBP11.08□□□□□ -0.64
VPS28-214ENST00000531032 ASB18Q6ZVZ8 466 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 BBS12Q6ZW61 710 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 OOSP2Q86WS3 158 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 RCOR2Q8IZ40 523 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 BEND7Q8N7W2 519 aaPredicted RBP11.08□□□□□ -0.64
VPS28-214ENST00000531032 OR2L2Q8NH16 312 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 OR8K5Q8NH50 307 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 ZNF398Q8TD17 642 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 HAUS1Q96CS2 278 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 LINC00615Q96LM1 132 aaPredicted RBP11.08□□□□□ -0.64
VPS28-214ENST00000531032 C12orf66Q96MD2 445 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 RUFY1Q96T51 708 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 INSM2Q96T92 566 aaPredicted RBP11.08□□□□□ -0.64
VPS28-214ENST00000531032 TUBB2BQ9BVA1 445 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 WWP1Q9H0M0 922 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 KIR3DX1Q9H7L2 352 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 AKIRIN1Q9H9L7 192 aaPredicted RBP11.08□□□□□ -0.64
VPS28-214ENST00000531032 HRASLS2Q9NWW9 162 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 SLC24A2Q9UI40 661 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 ACSL5Q9ULC5 683 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 PLAAQ9Y263 795 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 MAN2B2Q9Y2E5 1009 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 ARL5AQ9Y689 179 aa11.08□□□□□ -0.64
VPS28-214ENST00000531032 CFAP20Q9Y6A4 193 aaKnown RBP11.08□□□□□ -0.64
VPS28-214ENST00000531032 UBA6A0AVT1 1052 aaPredicted RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms