RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 KHDC1Q4VXA5 237 aaKnown RBP20.37■□□□□ 0.85
VPS28-209ENST00000528142 YAF2Q8IY57 180 aa20.37■□□□□ 0.85
VPS28-209ENST00000528142 MAGEC3Q8TD91 643 aa20.37■□□□□ 0.85
VPS28-209ENST00000528142 ELSPBP1Q96BH3 223 aa20.37■□□□□ 0.85
VPS28-209ENST00000528142 KXD1Q9BQD3 176 aa20.37■□□□□ 0.85
VPS28-209ENST00000528142 THTPAQ9BU02 230 aa20.37■□□□□ 0.85
VPS28-209ENST00000528142 EYSQ5T1H1 3165 aa20.37■□□□□ 0.85
VPS28-209ENST00000528142 ANTXRLA6NF34 631 aa20.37■□□□□ 0.85
VPS28-209ENST00000528142 H0Y858 1186 aa20.37■□□□□ 0.85
VPS28-209ENST00000528142 PIP5K1BO14986 540 aa20.37■□□□□ 0.85
VPS28-209ENST00000528142 UBDO15205 165 aa20.37■□□□□ 0.85
VPS28-209ENST00000528142 MTX2O75431 263 aa20.37■□□□□ 0.85
VPS28-209ENST00000528142 ENO3P13929 434 aaPredicted RBP20.37■□□□□ 0.85
VPS28-209ENST00000528142 AKT1P31749 480 aa20.37■□□□□ 0.85
VPS28-209ENST00000528142 EIF2DP41214 584 aaKnown RBP20.37■□□□□ 0.85
VPS28-209ENST00000528142 PARM1Q6UWI2 310 aa20.37■□□□□ 0.85
VPS28-209ENST00000528142 SERPINA13PQ6UXR4 307 aa20.37■□□□□ 0.85
VPS28-209ENST00000528142 DET1Q7L5Y6 550 aa20.37■□□□□ 0.85
VPS28-209ENST00000528142 SNX32Q86XE0 403 aa20.37■□□□□ 0.85
VPS28-209ENST00000528142 RAVER1Q8IY67 606 aaKnown RBP20.37■□□□□ 0.85
VPS28-209ENST00000528142 NRSN1Q8IZ57 195 aa20.37■□□□□ 0.85
VPS28-209ENST00000528142 UCMAQ8WVF2 138 aa20.37■□□□□ 0.85
VPS28-209ENST00000528142 BTN2A2Q8WVV5 523 aa20.37■□□□□ 0.85
VPS28-209ENST00000528142 DCUN1D1Q96GG9 259 aa20.37■□□□□ 0.85
VPS28-209ENST00000528142 COQ10AQ96MF6 247 aa20.37■□□□□ 0.85
VPS28-209ENST00000528142 RDH14Q9HBH5 336 aa20.37■□□□□ 0.85
VPS28-209ENST00000528142 THAP10Q9P2Z0 257 aaPredicted RBP20.37■□□□□ 0.85
VPS28-209ENST00000528142 ATP6AP2A0A1C7CYW4 349 aa20.36■□□□□ 0.85
VPS28-209ENST00000528142 AREL1O15033 823 aa20.36■□□□□ 0.85
VPS28-209ENST00000528142 TAPBPO15533 448 aa20.36■□□□□ 0.85
VPS28-209ENST00000528142 TBX10O75333 385 aa20.36■□□□□ 0.85
VPS28-209ENST00000528142 ATP6AP2O75787 350 aa20.36■□□□□ 0.85
VPS28-209ENST00000528142 AP2A2O94973 939 aa20.36■□□□□ 0.85
VPS28-209ENST00000528142 S100BP04271 92 aaPredicted RBP20.36■□□□□ 0.85
VPS28-209ENST00000528142 LAMP2P13473 410 aa20.36■□□□□ 0.85
VPS28-209ENST00000528142 ITGAXP20702 1163 aa20.36■□□□□ 0.85
VPS28-209ENST00000528142 IL12RB1P42701 662 aa20.36■□□□□ 0.85
VPS28-209ENST00000528142 CUL3Q13618 768 aa20.36■□□□□ 0.85
VPS28-209ENST00000528142 CYLC2Q14093 348 aaPredicted RBP20.36■□□□□ 0.85
VPS28-209ENST00000528142 ZNF284Q2VY69 593 aa20.36■□□□□ 0.85
VPS28-209ENST00000528142 SCUBE1Q8IWY4 988 aa20.36■□□□□ 0.85
VPS28-209ENST00000528142 ULK2Q8IYT8 1036 aa20.36■□□□□ 0.85
VPS28-209ENST00000528142 VPS35Q96QK1 796 aa20.36■□□□□ 0.85
VPS28-209ENST00000528142 ZNF382Q96SR6 550 aa20.36■□□□□ 0.85
VPS28-209ENST00000528142 NUSAP1Q9BXS6 441 aaKnown RBP20.36■□□□□ 0.85
VPS28-209ENST00000528142 AKTIPQ9H8T0 292 aa20.36■□□□□ 0.85
VPS28-209ENST00000528142 MRGBPQ9NV56 204 aa20.36■□□□□ 0.85
VPS28-209ENST00000528142 PTGDR2Q9Y5Y4 395 aa20.36■□□□□ 0.85
VPS28-209ENST00000528142 MTCH2Q9Y6C9 303 aa20.36■□□□□ 0.85
VPS28-209ENST00000528142 A0A088AWK7 358 aa20.35■□□□□ 0.85
VPS28-209ENST00000528142 CFAP99D6REC4 459 aa20.35■□□□□ 0.85
VPS28-209ENST00000528142 WNT9AO14904 365 aa20.35■□□□□ 0.85
VPS28-209ENST00000528142 NUAK1O60285 661 aa20.35■□□□□ 0.85
VPS28-209ENST00000528142 PEX11AO75192 247 aa20.35■□□□□ 0.85
VPS28-209ENST00000528142 KAT7O95251 611 aa20.35■□□□□ 0.85
VPS28-209ENST00000528142 VCLP18206 1134 aa20.35■□□□□ 0.85
VPS28-209ENST00000528142 SQLEQ14534 574 aa20.35■□□□□ 0.85
VPS28-209ENST00000528142 ACOX1Q15067 660 aa20.35■□□□□ 0.85
VPS28-209ENST00000528142 PHYKPLQ8IUZ5 450 aa20.35■□□□□ 0.85
VPS28-209ENST00000528142 HMGCLL1Q8TB92 370 aa20.35■□□□□ 0.85
VPS28-209ENST00000528142 WDR60Q8WVS4 1066 aa20.35■□□□□ 0.85
VPS28-209ENST00000528142 FGF14Q92915 247 aa20.35■□□□□ 0.85
VPS28-209ENST00000528142 CLPTM1LQ96KA5 538 aa20.35■□□□□ 0.85
VPS28-209ENST00000528142 ENTPD5O75356 428 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 GPC4O75487 556 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 UROSP10746 265 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 LTBRP36941 435 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 PKNOX1P55347 436 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 CDC16Q13042 620 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 PTK2BQ14289 1009 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 RBBP7Q16576 425 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 SULT1C3Q6IMI6 304 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 FBXL19Q6PCT2 694 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 GPRIN3Q6ZVF9 776 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 CYP2U1Q7Z449 544 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 GOLGA7Q7Z5G4 137 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 RHBDF1Q96CC6 855 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 AP2M1Q96CW1 435 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 DTD2Q96FN9 168 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 FAM161BQ96MY7 647 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 ACOX2Q99424 681 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 RPP25Q9BUL9 199 aaKnown RBP20.34■□□□□ 0.85
VPS28-209ENST00000528142 WRAP53Q9BUR4 548 aaKnown RBP20.34■□□□□ 0.85
VPS28-209ENST00000528142 FBRSL1Q9HCM7 1045 aaKnown RBP20.34■□□□□ 0.85
VPS28-209ENST00000528142 PRSS16Q9NQE7 514 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 TIMM22Q9Y584 194 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 ST14Q9Y5Y6 855 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 PLXNA2O75051 1894 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 KIAA1549LQ6ZVL6 1849 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 GUCA1CO95843 209 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 ADRB3P13945 408 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 MSH3P20585 1137 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 CCND1P24385 295 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 GRIA2P42262 883 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 ATP4BP51164 291 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 ERVPABLB-1P60509 514 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 ELP6Q0PNE2 266 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 KPNB1Q14974 876 aaKnown RBP20.34■□□□□ 0.85
VPS28-209ENST00000528142 PLEKHS1Q5SXH7 462 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 CES5AQ6NT32 575 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms