RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 FNDC11Q9BVV2 318 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 FAIM2Q9BWQ8 316 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 CRTAC1Q9NQ79 661 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 NDOR1Q9UHB4 597 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 SATB2Q9UPW6 733 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 SLC9A8Q9Y2E8 581 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 HS3ST4Q9Y661 456 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 KDM3BQ7LBC6 1761 aa12.52□□□□□ -0.4
USP53-209ENST00000514665 RGS10O43665 173 aa12.52□□□□□ -0.4
USP53-209ENST00000514665 PPIBP23284 216 aaKnown RBP12.52□□□□□ -0.4
USP53-209ENST00000514665 UGT2B15P54855 530 aa12.52□□□□□ -0.4
USP53-209ENST00000514665 CASP9P55211 416 aa12.52□□□□□ -0.4
USP53-209ENST00000514665 ECT2LQ008S8 904 aa12.52□□□□□ -0.4
USP53-209ENST00000514665 PLA2G4EQ3MJ16 856 aa12.52□□□□□ -0.4
USP53-209ENST00000514665 EPGNQ6UW88 154 aa12.52□□□□□ -0.4
USP53-209ENST00000514665 AP2M1Q96CW1 435 aa12.52□□□□□ -0.4
USP53-209ENST00000514665 SYT17Q9BSW7 474 aa12.52□□□□□ -0.4
USP53-209ENST00000514665 DNAJB4Q9UDY4 337 aa12.52□□□□□ -0.4
USP53-209ENST00000514665 CORO2BQ9UQ03 480 aa12.52□□□□□ -0.4
USP53-209ENST00000514665 LRRC42Q9Y546 428 aa12.52□□□□□ -0.4
USP53-209ENST00000514665 LRRC37A3O60309 1634 aa12.52□□□□□ -0.4
USP53-209ENST00000514665 MATN2O00339 956 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 DYRK3O43781 588 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 CBFA2T3O75081 653 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 ECI2O75521 394 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 CNTN5O94779 1100 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 CHRM1P11229 460 aaPredicted RBP12.52□□□□□ -0.41
USP53-209ENST00000514665 IL12RB1P42701 662 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 CREB5Q02930 508 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 ZNF252P-AS1Q0IIN9 211 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 GALNT2Q10471 571 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 MPPE1Q53F39 396 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 EMC10Q5UCC4 262 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 FAM20CQ8IXL6 584 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 KCTD13Q8WZ19 329 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 ASB9Q96DX5 294 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 FEM1CQ96JP0 617 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 TCF25Q9BQ70 676 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 WRAP53Q9BUR4 548 aaKnown RBP12.52□□□□□ -0.41
USP53-209ENST00000514665 HAPLN2Q9GZV7 340 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 GDAP2Q9NXN4 497 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 PTTG2Q9NZH5 202 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 GPSM3Q9Y4H4 160 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 TESMINQ9Y4I5 508 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 N6AMT1Q9Y5N5 214 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 E7ESA3 106 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 NR2F6P10588 404 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 RPS14P62263 151 aaKnown RBP12.52□□□□□ -0.41
USP53-209ENST00000514665 ZNF846Q147U1 533 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 HDDC2Q7Z4H3 204 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 C17orf64Q86WR6 236 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 ZDHHC21Q8IVQ6 265 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 RP1L1Q8IWN7 2480 aaPredicted RBP12.52□□□□□ -0.41
USP53-209ENST00000514665 FBXO22Q8NEZ5 403 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 NPLOC4Q8TAT6 608 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 DENND1AQ8TEH3 1009 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 PIH1D2Q8WWB5 315 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 EZH1Q92800 747 aaPredicted RBP12.52□□□□□ -0.41
USP53-209ENST00000514665 FUBP3Q96I24 572 aaKnown RBP eCLIP12.52□□□□□ -0.41
USP53-209ENST00000514665 NSMCE3Q96MG7 304 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 C1orf109Q9NX04 203 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 PTGFRNQ9P2B2 879 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 TLR6Q9Y2C9 796 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 MYH13Q9UKX3 1938 aa12.52□□□□□ -0.41
USP53-209ENST00000514665 CXCR6O00574 342 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 SYN3O14994 580 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 FFAR2O15552 330 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 SERPINB7O75635 380 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 MYCLP1P12525 358 aaPredicted RBP12.51□□□□□ -0.41
USP53-209ENST00000514665 IL12AP29459 219 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 CAPGP40121 348 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 WASP42768 502 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 HCAR3P49019 387 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 CCR3P51677 355 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 ERVK-8P63133 956 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 DENND5AQ6IQ26 1287 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 C11orf88Q6PI97 169 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 GPR65Q8IYL9 337 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 CFAP206Q8IYR0 622 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 ZFP28Q8NHY6 868 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 LRRC58Q96CX6 371 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 TFB2MQ9H5Q4 396 aaKnown RBP12.51□□□□□ -0.41
USP53-209ENST00000514665 EQTNQ9NQ60 294 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 PDE10AQ9Y233 779 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 SLC38A8A6NNN8 435 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 CHRM5P08912 532 aaPredicted RBP12.51□□□□□ -0.41
USP53-209ENST00000514665 ALPIP09923 528 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 AP1S1P61966 158 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 MERTKQ12866 999 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 CHADLQ6NUI6 762 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.51□□□□□ -0.41
USP53-209ENST00000514665 TIFABQ6ZNK6 161 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 TP53INP2Q8IXH6 220 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 Q96MT0 163 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 ZNF778Q96MU6 729 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 KCNA7Q96RP8 456 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 TIMMDC1Q9NPL8 285 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 CRNNQ9UBG3 495 aaPredicted RBP12.51□□□□□ -0.41
USP53-209ENST00000514665 C1QTNF3-AMACRE9PGA6 284 aa12.51□□□□□ -0.41
USP53-209ENST00000514665 BEST1O76090 585 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms