RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 ISL1P61371 349 aa7.33□□□□□ -1.24
CLIP1-205ENST00000514271 CHRNEQ04844 493 aa7.33□□□□□ -1.24
CLIP1-205ENST00000514271 PRKAA1Q13131 559 aa7.33□□□□□ -1.24
CLIP1-205ENST00000514271 KCNJ8Q15842 424 aa7.33□□□□□ -1.24
CLIP1-205ENST00000514271 C6orf163Q5TEZ5 329 aa7.33□□□□□ -1.24
CLIP1-205ENST00000514271 LRRTM3Q86VH5 581 aa7.33□□□□□ -1.24
CLIP1-205ENST00000514271 CDKL3Q8IVW4 592 aaPredicted RBP7.33□□□□□ -1.24
CLIP1-205ENST00000514271 SIX6OS1Q8N1H7 587 aa7.33□□□□□ -1.24
CLIP1-205ENST00000514271 DPP10Q8N608 796 aa7.33□□□□□ -1.24
CLIP1-205ENST00000514271 SLC2A14Q8TDB8 520 aa7.33□□□□□ -1.24
CLIP1-205ENST00000514271 RXFP2Q8WXD0 754 aa7.33□□□□□ -1.24
CLIP1-205ENST00000514271 PLD4Q96BZ4 506 aa7.33□□□□□ -1.24
CLIP1-205ENST00000514271 CFAP36Q96G28 342 aa7.33□□□□□ -1.24
CLIP1-205ENST00000514271 PGLYRP2Q96PD5 576 aa7.33□□□□□ -1.24
CLIP1-205ENST00000514271 TGIF2Q9GZN2 237 aa7.33□□□□□ -1.24
CLIP1-205ENST00000514271 LHPPQ9H008 270 aa7.33□□□□□ -1.24
CLIP1-205ENST00000514271 ABCC13Q9NSE7 274 aa7.33□□□□□ -1.24
CLIP1-205ENST00000514271 TSPAN16Q9UKR8 245 aa7.33□□□□□ -1.24
CLIP1-205ENST00000514271 CCL27Q9Y4X3 112 aa7.33□□□□□ -1.24
CLIP1-205ENST00000514271 TIMM13Q9Y5L4 95 aaPredicted RBP7.33□□□□□ -1.24
CLIP1-205ENST00000514271 PLXNA2O75051 1894 aa7.33□□□□□ -1.24
CLIP1-205ENST00000514271 LOC105371267A0A1B0GV96 52 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 SLC16A6O15403 523 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 ADAM12O43184 909 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 SLC7A4O43246 635 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 ZBTB11O95625 1053 aaPredicted RBP7.32□□□□□ -1.24
CLIP1-205ENST00000514271 F11P03951 625 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 SLC2A3P11169 496 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 LMO2P25791 158 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 CAPGP40121 348 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 OPRL1P41146 370 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 PLA2G16P53816 162 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 AIF1P55008 147 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 SLC6A3Q01959 620 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 ARMC4Q5T2S8 1044 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 LGSNQ5TDP6 509 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 MLIPQ5VWP3 458 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 TMEM26Q6ZUK4 368 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 FKBP9P1Q75LS8 142 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 CMC1Q7Z7K0 106 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 METTL3Q86U44 580 aaKnown RBP7.32□□□□□ -1.24
CLIP1-205ENST00000514271 FAM124AQ86V42 546 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 CELF5Q8N6W0 485 aaKnown RBP7.32□□□□□ -1.24
CLIP1-205ENST00000514271 CCDC185Q8N715 623 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 HTR3CQ8WXA8 447 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 RHBDF1Q96CC6 855 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 C3orf30Q96M34 536 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 NPY6RQ99463 290 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 TRAF4Q9BUZ4 470 aaPredicted RBP7.32□□□□□ -1.24
CLIP1-205ENST00000514271 AMBRA1Q9C0C7 1298 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 RMND5AQ9H871 391 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 SLC2A4RGQ9NR83 387 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 ERVK-11Q9UQG0 969 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 MED16Q9Y2X0 877 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 GPR45Q9Y5Y3 372 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 MFSD11O43934 449 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 KLHL41O60662 606 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 DPM1O60762 260 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 MRPS14O60783 128 aaKnown RBP7.32□□□□□ -1.24
CLIP1-205ENST00000514271 ZNF189O75820 626 aaPredicted RBP7.32□□□□□ -1.24
CLIP1-205ENST00000514271 SLC4A1P02730 911 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 HMGA1P17096 107 aaKnown RBP7.32□□□□□ -1.24
CLIP1-205ENST00000514271 ATF6P18850 670 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 SLC26A3P40879 764 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 EIF2DP41214 584 aaKnown RBP7.32□□□□□ -1.24
CLIP1-205ENST00000514271 GRIA4P48058 902 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 NUDT2P50583 147 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 BASP1P80723 227 aaKnown RBP7.32□□□□□ -1.24
CLIP1-205ENST00000514271 RCAN2Q14206 197 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 SELPLGQ14242 412 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 DLG2Q15700 870 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 FAM219BQ5XKK7 198 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 ASTLQ6HA08 431 aaPredicted RBP7.32□□□□□ -1.24
CLIP1-205ENST00000514271 IYDQ6PHW0 289 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 SPRED2Q7Z698 418 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 RBM23Q86U06 439 aaKnown RBP7.32□□□□□ -1.24
CLIP1-205ENST00000514271 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.32□□□□□ -1.24
CLIP1-205ENST00000514271 KCT2Q8NC54 265 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 SH3RF2Q8TEC5 729 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 FAR1Q8WVX9 515 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 FBXO32Q969P5 355 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 SERPINI1Q99574 410 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 NPAS2Q99743 824 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 C8orf33Q9H7E9 229 aaPredicted RBP7.32□□□□□ -1.24
CLIP1-205ENST00000514271 NMRAL1Q9HBL8 299 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 SPAG4Q9NPE6 437 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 PSME2Q9UL46 239 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 STAP1Q9ULZ2 295 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 MYO18AQ92614 2054 aaKnown RBP7.32□□□□□ -1.24
CLIP1-205ENST00000514271 CXorf51AA0A1B0GTR3 108 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 KCNU1A8MYU2 1149 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 TMEM229AB2RXF0 380 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 HHLA1C9JL84 531 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 PRMT3O60678 531 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 CAPN3P20807 821 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 CXCR2P25025 360 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 PTPN3P26045 913 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 HTR7P34969 479 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 RAP1GAPP47736 663 aa7.32□□□□□ -1.24
CLIP1-205ENST00000514271 MASP1P48740 699 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms