RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 ATP6V1HQ9UI12 483 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 STOML2Q9UJZ1 356 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 SYCE1LA8MT33 242 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 UPK3BL1B0FP48 263 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 UPK3BL2E5RIL1 263 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 CDX4O14627 284 aaPredicted RBP7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 ATP5HO75947 161 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 HAUS5O94927 633 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 SLC25A14O95258 325 aaPredicted RBP7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 CRYZL1O95825 349 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 GSTA2P09210 222 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 ZNF806P0C7X5 589 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 DBTP11182 482 aaKnown RBP7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 POU2F1P14859 743 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 MX2P20592 715 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 HNRNPA2B1P22626 353 aaKnown RBP7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 CD27P26842 260 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 OXTRP30559 389 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 GRIA1P42261 906 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 ABCG1P45844 678 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 GDF10P55107 478 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 DPYSQ14117 519 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 IRF4Q15306 451 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 TRIP6Q15654 476 aaKnown RBP7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 CSRP2Q16527 193 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 CCBE1Q6UXH8 406 aaPredicted RBP7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 UMODL1-AS1Q8N2C9 162 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 TRIM56Q9BRZ2 755 aaKnown RBP7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 MLPHQ9BV36 600 aaPredicted RBP7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 TMEM168Q9H0V1 697 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 ETNK1Q9HBU6 452 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 PCDH9Q9HC56 1237 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 RAB6BQ9NRW1 208 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 ATXN7L1Q9ULK2 861 aaPredicted RBP7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 MAD1L1Q9Y6D9 718 aa7.81□□□□□ -1.16
LIMCH1-219ENST00000514096 IGLV3-10A0A075B6K4 115 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 OR51F1A6NGY5 319 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 CCT8L1PA6NM43 557 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 ICMTO60725 284 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 TSHRP16473 764 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 RPS21P63220 83 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 WSCD2Q2TBF2 565 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 ZRANB3Q5FWF4 1079 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 STK32CQ86UX6 486 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 LMNTD1Q8N9Z9 388 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 ATXN7L3BQ96GX2 97 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 OR2AG1Q9H205 316 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 SLC32A1Q9H598 525 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 ARL5AQ9Y689 179 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 MDC1Q14676 2089 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 SPINT1O43278 529 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 ZNF254O75437 659 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 ESRRAP11474 423 aaPredicted RBP7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 HGFP14210 728 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 TYRP1P17643 537 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 HTR1BP28222 390 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 CNR2P34972 360 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 CDKN2BP42772 138 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 WNT3AP56704 352 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 CD83Q01151 205 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 IL10RBQ08334 325 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 NFATC2Q13469 925 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 PDK2Q15119 407 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 INSCQ1MX18 579 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 SLC45A4Q5BKX6 768 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 C6orf132Q5T0Z8 1188 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 MANEALQ5VSG8 457 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 BEND5Q7L4P6 421 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 JAMLQ86YT9 394 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 GLIS1Q8NBF1 620 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 RCBTB1Q8NDN9 531 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 HTR3CQ8WXA8 447 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 VPS35Q96QK1 796 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 ELF4Q99607 663 aaPredicted RBP7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 FERMT1Q9BQL6 677 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 PDP2Q9P2J9 529 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 FETUBQ9UGM5 382 aa7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 SMG1Q96Q15 3661 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-219ENST00000514096 ZSCAN5CA6NGD5 496 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 TSPAN4O14817 238 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 PGM3O95394 542 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 APOA4P06727 396 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 HMOX2P30519 316 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 SCNN1AP37088 669 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 ARCN1P48444 511 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 NDST2P52849 883 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 RACK1P63244 317 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 XRCC4Q13426 336 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 EIF4EBP2Q13542 120 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 KRT33BQ14525 404 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 QPCTQ16769 361 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 C19orf48Q6RUI8 117 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 USP45Q70EL2 814 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 ZNF567Q8N184 647 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 ARHGAP24Q8N264 748 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 ZNF276Q8N554 614 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 SCYL1Q96KG9 808 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 SGK2Q9HBY8 427 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 TXNDC16Q9P2K2 825 aa7.79□□□□□ -1.16
LIMCH1-219ENST00000514096 PPARGC1AQ9UBK2 798 aaKnown RBP7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms