RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 LIMK2P53671 638 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 ZBED6P86452 979 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 P2RY6Q15077 328 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 HIGD2BQ4VC39 106 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 NSUN5P2Q63ZY6 315 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 TSSK4Q6SA08 328 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 SDCCAG8Q86SQ7 713 aaPredicted RBP2.37□□□□□ -2.03
NUP54-208ENST00000508604 TBC1D1Q86TI0 1168 aaPredicted RBP2.37□□□□□ -2.03
NUP54-208ENST00000508604 CCDC190Q86UF4 302 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 SPATA5Q8NB90 893 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 GTF3AQ92664 365 aaKnown RBP2.37□□□□□ -2.03
NUP54-208ENST00000508604 WWTR1Q9GZV5 400 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 RIC8AQ9NPQ8 531 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 INTS9Q9NV88 658 aaKnown RBP2.37□□□□□ -2.03
NUP54-208ENST00000508604 CWC15Q9P013 229 aaKnown RBP2.37□□□□□ -2.03
NUP54-208ENST00000508604 TAGLN3Q9UI15 199 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 MUTYHQ9UIF7 546 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 GJD2Q9UKL4 321 aa2.37□□□□□ -2.03
NUP54-208ENST00000508604 EXO1Q9UQ84 846 aaKnown RBP2.37□□□□□ -2.03
NUP54-208ENST00000508604 NKX2-2O95096 273 aa2.36□□□□□ -2.03
NUP54-208ENST00000508604 PAFAH1B1P43034 410 aa2.36□□□□□ -2.03
NUP54-208ENST00000508604 THOP1P52888 689 aa2.36□□□□□ -2.03
NUP54-208ENST00000508604 GSDMDP57764 484 aa2.36□□□□□ -2.03
NUP54-208ENST00000508604 FIP1L1Q6UN15 594 aaKnown RBP2.36□□□□□ -2.03
NUP54-208ENST00000508604 HPS6Q86YV9 775 aa2.36□□□□□ -2.03
NUP54-208ENST00000508604 HACE1Q8IYU2 909 aa2.36□□□□□ -2.03
NUP54-208ENST00000508604 OR2T11Q8NH01 316 aa2.36□□□□□ -2.03
NUP54-208ENST00000508604 ARSGQ96EG1 525 aa2.36□□□□□ -2.03
NUP54-208ENST00000508604 APOPT1Q96IL0 206 aa2.36□□□□□ -2.03
NUP54-208ENST00000508604 CELA1Q9UNI1 258 aa2.36□□□□□ -2.03
NUP54-208ENST00000508604 WDR37Q9Y2I8 494 aa2.36□□□□□ -2.03
NUP54-208ENST00000508604 LAS1LQ9Y4W2 734 aaKnown RBP2.36□□□□□ -2.03
NUP54-208ENST00000508604 TEX13DA0A0J9YY54 714 aaPredicted RBP2.35□□□□□ -2.03
NUP54-208ENST00000508604 LDLRAD4O15165 306 aa2.35□□□□□ -2.03
NUP54-208ENST00000508604 CBLP22681 906 aa2.35□□□□□ -2.03
NUP54-208ENST00000508604 GGT5P36269 586 aa2.35□□□□□ -2.03
NUP54-208ENST00000508604 PIK3CAP42336 1068 aa2.35□□□□□ -2.03
NUP54-208ENST00000508604 EIF3BP55884 814 aaKnown RBP2.35□□□□□ -2.03
NUP54-208ENST00000508604 FASTKD3Q14CZ7 662 aaKnown RBP2.35□□□□□ -2.03
NUP54-208ENST00000508604 CXorf66Q5JRM2 361 aaPredicted RBP2.35□□□□□ -2.03
NUP54-208ENST00000508604 IL27RAQ6UWB1 636 aa2.35□□□□□ -2.03
NUP54-208ENST00000508604 ZNF554Q86TJ5 538 aa2.35□□□□□ -2.03
NUP54-208ENST00000508604 RASGEF1CQ8N431 466 aa2.35□□□□□ -2.03
NUP54-208ENST00000508604 POM121L12Q8N7R1 296 aa2.35□□□□□ -2.03
NUP54-208ENST00000508604 NIPA2Q8N8Q9 360 aa2.35□□□□□ -2.03
NUP54-208ENST00000508604 HPSE2Q8WWQ2 592 aa2.35□□□□□ -2.03
NUP54-208ENST00000508604 PSPC1Q8WXF1 523 aaKnown RBP2.35□□□□□ -2.03
NUP54-208ENST00000508604 ARHGAP45Q92619 1136 aa2.35□□□□□ -2.03
NUP54-208ENST00000508604 GPR63Q9BZJ6 419 aa2.35□□□□□ -2.03
NUP54-208ENST00000508604 SEMA6AQ9H2E6 1030 aa2.35□□□□□ -2.03
NUP54-208ENST00000508604 PIGMQ9H3S5 423 aa2.35□□□□□ -2.03
NUP54-208ENST00000508604 KAT14Q9H8E8 782 aa2.35□□□□□ -2.03
NUP54-208ENST00000508604 RCC2Q9P258 522 aaKnown RBP2.35□□□□□ -2.03
NUP54-208ENST00000508604 CAMK2AQ9UQM7 478 aa2.35□□□□□ -2.03
NUP54-208ENST00000508604 CLIC4Q9Y696 253 aa2.35□□□□□ -2.03
NUP54-208ENST00000508604 MYH15Q9Y2K3 1946 aa2.35□□□□□ -2.03
NUP54-208ENST00000508604 IGHV3OR16-10A0A075B7F0 116 aa2.34□□□□□ -2.03
NUP54-208ENST00000508604 SOCS3O14543 225 aa2.34□□□□□ -2.03
NUP54-208ENST00000508604 ATP2A1O14983 1001 aa2.34□□□□□ -2.03
NUP54-208ENST00000508604 ATP6V0E1O15342 81 aa2.34□□□□□ -2.03
NUP54-208ENST00000508604 C22orf31O95567 290 aa2.34□□□□□ -2.03
NUP54-208ENST00000508604 CLDN1O95832 211 aa2.34□□□□□ -2.03
NUP54-208ENST00000508604 PIK3R1P27986 724 aa2.34□□□□□ -2.03
NUP54-208ENST00000508604 MRPS34P82930 218 aaKnown RBP2.34□□□□□ -2.03
NUP54-208ENST00000508604 LGALS3BPQ08380 585 aa2.34□□□□□ -2.03
NUP54-208ENST00000508604 CDONQ4KMG0 1287 aa2.34□□□□□ -2.03
NUP54-208ENST00000508604 DENND5BQ6ZUT9 1274 aa2.34□□□□□ -2.03
NUP54-208ENST00000508604 CCDC146Q8IYE0 955 aa2.34□□□□□ -2.03
NUP54-208ENST00000508604 SLC34A3Q8N130 599 aa2.34□□□□□ -2.03
NUP54-208ENST00000508604 Q8N7P7 452 aa2.34□□□□□ -2.03
NUP54-208ENST00000508604 L3MBTL4Q8NA19 623 aa2.34□□□□□ -2.03
NUP54-208ENST00000508604 GAL3ST4Q96RP7 486 aa2.34□□□□□ -2.03
NUP54-208ENST00000508604 PUS3Q9BZE2 481 aaKnown RBP2.34□□□□□ -2.03
NUP54-208ENST00000508604 DENND2DQ9H6A0 471 aaPredicted RBP2.34□□□□□ -2.03
NUP54-208ENST00000508604 MIOSQ9NXC5 875 aa2.34□□□□□ -2.03
NUP54-208ENST00000508604 FBXW11Q9UKB1 542 aa2.34□□□□□ -2.03
NUP54-208ENST00000508604 SARDHQ9UL12 918 aa2.34□□□□□ -2.03
NUP54-208ENST00000508604 TMEM184BQ9Y519 407 aaPredicted RBP2.34□□□□□ -2.03
NUP54-208ENST00000508604 CCDC194A0A1B0GVG4 234 aa2.34□□□□□ -2.04
NUP54-208ENST00000508604 MAP2K7O14733 419 aa2.34□□□□□ -2.04
NUP54-208ENST00000508604 KHDRBS3O75525 346 aaKnown RBP2.34□□□□□ -2.04
NUP54-208ENST00000508604 ZSCAN5DPP0CG00 497 aa2.34□□□□□ -2.04
NUP54-208ENST00000508604 NKX2-1P43699 371 aaPredicted RBP2.34□□□□□ -2.04
NUP54-208ENST00000508604 LRMPQ12912 555 aa2.34□□□□□ -2.04
NUP54-208ENST00000508604 KLC3Q6P597 504 aa2.34□□□□□ -2.04
NUP54-208ENST00000508604 HOGA1Q86XE5 327 aa2.34□□□□□ -2.04
NUP54-208ENST00000508604 ZNF843Q8N446 348 aa2.34□□□□□ -2.04
NUP54-208ENST00000508604 HSD17B8Q92506 261 aa2.34□□□□□ -2.04
NUP54-208ENST00000508604 DYRK2Q92630 601 aa2.34□□□□□ -2.04
NUP54-208ENST00000508604 SLCO2A1Q92959 643 aa2.34□□□□□ -2.04
NUP54-208ENST00000508604 ZBTB10Q96DT7 871 aa2.34□□□□□ -2.04
NUP54-208ENST00000508604 MYADMQ96S97 322 aa2.34□□□□□ -2.04
NUP54-208ENST00000508604 THEGQ9P2T0 379 aa2.34□□□□□ -2.04
NUP54-208ENST00000508604 INTS6Q9UL03 887 aaKnown RBP2.34□□□□□ -2.04
NUP54-208ENST00000508604 TBX20Q9UMR3 447 aa2.34□□□□□ -2.04
NUP54-208ENST00000508604 OR2M5A3KFT3 312 aa2.33□□□□□ -2.04
NUP54-208ENST00000508604 IDH3BO43837 385 aa2.33□□□□□ -2.04
NUP54-208ENST00000508604 SLC25A12O75746 678 aa2.33□□□□□ -2.04
NUP54-208ENST00000508604 ICAM1P05362 532 aa2.33□□□□□ -2.04
NUP54-208ENST00000508604 RBMS1P29558 406 aaKnown RBP2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms