RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 SEMG2Q02383 582 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 TRA2AQ13595 282 aaKnown RBP eCLIP8.31□□□□□ -1.08
PDGFC-205ENST00000506880 GBX1Q14549 363 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 KLHL38Q2WGJ6 581 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 ZNF658BQ4V348 819 aaPredicted RBP8.31□□□□□ -1.08
PDGFC-205ENST00000506880 TEDDM1Q5T9Z0 273 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 LGSNQ5TDP6 509 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 ZNF470Q6ECI4 717 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 TCEAL6Q6IPX3 200 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 FAM45BPQ6NSW5 357 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 IYDQ6PHW0 289 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 UNC5DQ6UXZ4 953 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 RFLNAQ6ZTI6 216 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 C3orf62Q6ZUJ4 267 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 MARK2Q7KZI7 788 aaKnown RBP8.31□□□□□ -1.08
PDGFC-205ENST00000506880 ZNF547Q8IVP9 402 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 KIAA2013Q8IYS2 634 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 PELI3Q8N2H9 469 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 DCLK2Q8N568 766 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 FBXO15Q8NCQ5 510 aaPredicted RBP8.31□□□□□ -1.08
PDGFC-205ENST00000506880 FAM46DQ8NEK8 389 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 FAM45AQ8TCE6 357 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 MAPK15Q8TD08 544 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 ZDHHC1Q8WTX9 485 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 TCEAL3Q969E4 200 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 TSACCQ96A04 125 aaPredicted RBP8.31□□□□□ -1.08
PDGFC-205ENST00000506880 TSPAN17Q96FV3 270 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 PDLIM5Q96HC4 596 aaKnown RBP8.31□□□□□ -1.08
PDGFC-205ENST00000506880 ZNF778Q96MU6 729 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 FOPNLQ96NB1 174 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 SMIM14Q96QK8 99 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 PHOX2BQ99453 314 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 CCDC77Q9BR77 488 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 TRIM31Q9BZY9 425 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 TMEM168Q9H0V1 697 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 DPH5Q9H2P9 285 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 RHOJQ9H4E5 214 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 UGT1A7Q9HAW7 530 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 UGT1A10Q9HAW8 530 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 UGT1A8Q9HAW9 530 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 SAYSD1Q9NPB0 183 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 CAMSAP3Q9P1Y5 1249 aaPredicted RBP8.31□□□□□ -1.08
PDGFC-205ENST00000506880 SLC2A6Q9UGQ3 507 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 DMGDHQ9UI17 866 aaKnown RBP8.31□□□□□ -1.08
PDGFC-205ENST00000506880 KLF15Q9UIH9 416 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 ZNF180Q9UJW8 692 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 CA5BQ9Y2D0 317 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 GPSM3Q9Y4H4 160 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 KCTD3Q9Y597 815 aa8.31□□□□□ -1.08
PDGFC-205ENST00000506880 A0A087WUV0 522 aaPredicted RBP8.3□□□□□ -1.08
PDGFC-205ENST00000506880 SLC5A10A0PJK1 596 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 E5RI56 91 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 SGTAO43765 313 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 VPS26AO75436 327 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 GPC4O75487 556 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 RFPL3O75679 317 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 SLC35G4P0C7Q5 338 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 AOAHP28039 575 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 SPRP35270 261 aaPredicted RBP8.3□□□□□ -1.08
PDGFC-205ENST00000506880 GP5P40197 560 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 CRADDP78560 199 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 POU4F1Q01851 419 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 SP140Q13342 867 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 EIF3IQ13347 325 aaKnown RBP8.3□□□□□ -1.08
PDGFC-205ENST00000506880 ARHGAP19Q14CB8 494 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 PTPRRQ15256 657 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 TRIP6Q15654 476 aaKnown RBP8.3□□□□□ -1.08
PDGFC-205ENST00000506880 MSS51Q4VC12 460 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 CDKL4Q5MAI5 379 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 TPRG1LQ5T0D9 272 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 CHCHD2P9Q5T1J5 151 aaPredicted RBP8.3□□□□□ -1.08
PDGFC-205ENST00000506880 GRTP1Q5TC63 336 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 PTRHD1Q6GMV3 140 aaKnown RBP8.3□□□□□ -1.08
PDGFC-205ENST00000506880 CAPRIN2Q6IMN6 1127 aaKnown RBP8.3□□□□□ -1.08
PDGFC-205ENST00000506880 TTC23LQ6PF05 361 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 CHST15Q7LFX5 561 aaPredicted RBP8.3□□□□□ -1.08
PDGFC-205ENST00000506880 OTOAQ7RTW8 1153 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 PDZD3Q86UT5 571 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 ALYREFQ86V81 257 aaKnown RBP8.3□□□□□ -1.08
PDGFC-205ENST00000506880 TMPRSS12Q86WS5 348 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 NRROSQ86YC3 692 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 TBC1D21Q8IYX1 336 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 SLC22A15Q8IZD6 547 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 RAB42Q8N4Z0 105 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 TAB3Q8N5C8 712 aaPredicted RBP8.3□□□□□ -1.08
PDGFC-205ENST00000506880 OTUD6BQ8N6M0 293 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 SETD7Q8WTS6 366 aaKnown RBP8.3□□□□□ -1.08
PDGFC-205ENST00000506880 CNDP2Q96KP4 475 aaKnown RBP8.3□□□□□ -1.08
PDGFC-205ENST00000506880 APOLD1Q96LR9 279 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 BIRC8Q96P09 236 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 FCRL3Q96P31 734 aaPredicted RBP8.3□□□□□ -1.08
PDGFC-205ENST00000506880 CD180Q99467 661 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 ACSS3Q9H6R3 686 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 SUDS3Q9H7L9 328 aaPredicted RBP8.3□□□□□ -1.08
PDGFC-205ENST00000506880 COG4Q9H9E3 785 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 SYTL2Q9HCH5 934 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 EPHA6Q9UF33 1036 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 MOSPD1Q9UJG1 213 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 PADI4Q9UM07 663 aa8.3□□□□□ -1.08
PDGFC-205ENST00000506880 CHMP2BQ9UQN3 213 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms