RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 PCSK5Q92824 1860 aa13.63□□□□□ -0.23
VARS-227ENST00000489979 MDC1Q14676 2089 aaKnown RBP13.62□□□□□ -0.23
VARS-227ENST00000489979 DIDO1Q9BTC0 2240 aaKnown RBP13.62□□□□□ -0.23
VARS-227ENST00000489979 DDX3YO15523 660 aaKnown RBP13.62□□□□□ -0.23
VARS-227ENST00000489979 ZBTB11O95625 1053 aaPredicted RBP13.62□□□□□ -0.23
VARS-227ENST00000489979 CTSCP53634 463 aa13.62□□□□□ -0.23
VARS-227ENST00000489979 RRADP55042 308 aa13.62□□□□□ -0.23
VARS-227ENST00000489979 CDK18Q07002 472 aa13.62□□□□□ -0.23
VARS-227ENST00000489979 PPIDQ08752 370 aaKnown RBP13.62□□□□□ -0.23
VARS-227ENST00000489979 DMPKQ09013 629 aa13.62□□□□□ -0.23
VARS-227ENST00000489979 ATP1A4Q13733 1029 aa13.62□□□□□ -0.23
VARS-227ENST00000489979 NFE2L1Q14494 772 aa13.62□□□□□ -0.23
VARS-227ENST00000489979 PDK2Q15119 407 aa13.62□□□□□ -0.23
VARS-227ENST00000489979 STX1AQ16623 288 aa13.62□□□□□ -0.23
VARS-227ENST00000489979 ZRANB3Q5FWF4 1079 aa13.62□□□□□ -0.23
VARS-227ENST00000489979 MED25Q71SY5 747 aa13.62□□□□□ -0.23
VARS-227ENST00000489979 NT5DC3Q86UY8 548 aa13.62□□□□□ -0.23
VARS-227ENST00000489979 OOSP2Q86WS3 158 aa13.62□□□□□ -0.23
VARS-227ENST00000489979 IQCKQ8N0W5 287 aa13.62□□□□□ -0.23
VARS-227ENST00000489979 BRSK1Q8TDC3 778 aa13.62□□□□□ -0.23
VARS-227ENST00000489979 CPT1BQ92523 772 aa13.62□□□□□ -0.23
VARS-227ENST00000489979 IMP4Q96G21 291 aaKnown RBP13.62□□□□□ -0.23
VARS-227ENST00000489979 PPM1MQ96MI6 270 aa13.62□□□□□ -0.23
VARS-227ENST00000489979 TTC25Q96NG3 672 aa13.62□□□□□ -0.23
VARS-227ENST00000489979 LMBRD1Q9NUN5 540 aa13.62□□□□□ -0.23
VARS-227ENST00000489979 IMP3Q9NV31 184 aaKnown RBP13.62□□□□□ -0.23
VARS-227ENST00000489979 SOHLH2Q9NX45 425 aa13.62□□□□□ -0.23
VARS-227ENST00000489979 SPO11Q9Y5K1 396 aa13.62□□□□□ -0.23
VARS-227ENST00000489979 CCDC88CQ9P219 2028 aa13.61□□□□□ -0.23
VARS-227ENST00000489979 OR6C74A6NCV1 312 aa13.61□□□□□ -0.23
VARS-227ENST00000489979 ANKUB1A6NFN9 424 aa13.61□□□□□ -0.23
VARS-227ENST00000489979 LCA5LO95447 670 aa13.61□□□□□ -0.23
VARS-227ENST00000489979 CYP1A2P05177 515 aa13.61□□□□□ -0.23
VARS-227ENST00000489979 CAPN1P07384 714 aa13.61□□□□□ -0.23
VARS-227ENST00000489979 MTHFD1P11586 935 aaKnown RBP13.61□□□□□ -0.23
VARS-227ENST00000489979 PBLDP30039 288 aaPredicted RBP13.61□□□□□ -0.23
VARS-227ENST00000489979 RORAP35398 523 aa13.61□□□□□ -0.23
VARS-227ENST00000489979 ARCN1P48444 511 aaKnown RBP13.61□□□□□ -0.23
VARS-227ENST00000489979 KPNA2P52292 529 aaKnown RBP13.61□□□□□ -0.23
VARS-227ENST00000489979 TAS2R40P59535 323 aa13.61□□□□□ -0.23
VARS-227ENST00000489979 ABRQ12979 859 aa13.61□□□□□ -0.23
VARS-227ENST00000489979 XRCC4Q13426 336 aa13.61□□□□□ -0.23
VARS-227ENST00000489979 VWA5B1Q5TIE3 1220 aa13.61□□□□□ -0.23
VARS-227ENST00000489979 ARMC6Q6NXE6 501 aa13.61□□□□□ -0.23
VARS-227ENST00000489979 DUS1LQ6P1R4 473 aaKnown RBP13.61□□□□□ -0.23
VARS-227ENST00000489979 TMEM220Q6QAJ8 160 aa13.61□□□□□ -0.23
VARS-227ENST00000489979 FAM198BQ6UWH4 519 aa13.61□□□□□ -0.23
VARS-227ENST00000489979 MAP7D3Q8IWC1 876 aa13.61□□□□□ -0.23
VARS-227ENST00000489979 RASGEF1AQ8N9B8 481 aa13.61□□□□□ -0.23
VARS-227ENST00000489979 TTC13Q8NBP0 860 aa13.61□□□□□ -0.23
VARS-227ENST00000489979 CLIP3Q96DZ5 547 aa13.61□□□□□ -0.23
VARS-227ENST00000489979 SGSM3Q96HU1 749 aa13.61□□□□□ -0.23
VARS-227ENST00000489979 ZNF830Q96NB3 372 aaPredicted RBP13.61□□□□□ -0.23
VARS-227ENST00000489979 AGAP3Q96P47 875 aa13.61□□□□□ -0.23
VARS-227ENST00000489979 RANBP9Q96S59 729 aa13.61□□□□□ -0.23
VARS-227ENST00000489979 INSM2Q96T92 566 aaPredicted RBP13.61□□□□□ -0.23
VARS-227ENST00000489979 TLR10Q9BXR5 811 aa13.61□□□□□ -0.23
VARS-227ENST00000489979 XPO4Q9C0E2 1151 aaKnown RBP13.61□□□□□ -0.23
VARS-227ENST00000489979 FANCEQ9HB96 536 aa13.61□□□□□ -0.23
VARS-227ENST00000489979 CBX8Q9HC52 389 aa13.61□□□□□ -0.23
VARS-227ENST00000489979 C5AR2Q9P296 337 aa13.61□□□□□ -0.23
VARS-227ENST00000489979 BTRCQ9Y297 605 aa13.61□□□□□ -0.23
VARS-227ENST00000489979 POLEQ07864 2286 aa13.61□□□□□ -0.23
VARS-227ENST00000489979 OR2AG2A6NM03 316 aa13.6□□□□□ -0.23
VARS-227ENST00000489979 F5H423 210 aaPredicted RBP13.6□□□□□ -0.23
VARS-227ENST00000489979 ANKRD17O75179 2603 aaKnown RBP13.6□□□□□ -0.23
VARS-227ENST00000489979 MT-CYBP00156 380 aaPredicted RBP13.6□□□□□ -0.23
VARS-227ENST00000489979 AP1B1Q10567 949 aa13.6□□□□□ -0.23
VARS-227ENST00000489979 ELOAQ14241 798 aaKnown RBP13.6□□□□□ -0.23
VARS-227ENST00000489979 KYNUQ16719 465 aa13.6□□□□□ -0.23
VARS-227ENST00000489979 CCDC70Q6NSX1 233 aa13.6□□□□□ -0.23
VARS-227ENST00000489979 SYTL1Q8IYJ3 562 aa13.6□□□□□ -0.23
VARS-227ENST00000489979 SPATA22Q8NHS9 363 aa13.6□□□□□ -0.23
VARS-227ENST00000489979 TADA1Q96BN2 335 aa13.6□□□□□ -0.23
VARS-227ENST00000489979 WWP1Q9H0M0 922 aa13.6□□□□□ -0.23
VARS-227ENST00000489979 SLC25A51Q9H1U9 297 aa13.6□□□□□ -0.23
VARS-227ENST00000489979 IL26Q9NPH9 171 aa13.6□□□□□ -0.23
VARS-227ENST00000489979 PCMTD2Q9NV79 361 aa13.6□□□□□ -0.23
VARS-227ENST00000489979 B3GNT3Q9Y2A9 372 aa13.6□□□□□ -0.23
VARS-227ENST00000489979 CROCCQ5TZA2 2017 aa13.59□□□□□ -0.23
VARS-227ENST00000489979 SLC9B1P1A6NJY1 282 aa13.59□□□□□ -0.23
VARS-227ENST00000489979 TMEM150CB9EJG8 249 aa13.59□□□□□ -0.23
VARS-227ENST00000489979 GPR39O43194 453 aa13.59□□□□□ -0.23
VARS-227ENST00000489979 UGT1A9O60656 530 aa13.59□□□□□ -0.23
VARS-227ENST00000489979 NDST3O95803 873 aa13.59□□□□□ -0.23
VARS-227ENST00000489979 UGT1A6P19224 532 aa13.59□□□□□ -0.23
VARS-227ENST00000489979 POLR2CP19387 275 aaPredicted RBP13.59□□□□□ -0.23
VARS-227ENST00000489979 UGT1A1P22309 533 aa13.59□□□□□ -0.23
VARS-227ENST00000489979 UGT1A4P22310 534 aa13.59□□□□□ -0.23
VARS-227ENST00000489979 CA5AP35218 305 aa13.59□□□□□ -0.23
VARS-227ENST00000489979 NCF4Q15080 339 aa13.59□□□□□ -0.23
VARS-227ENST00000489979 PTCHD3Q3KNS1 767 aa13.59□□□□□ -0.23
VARS-227ENST00000489979 FILIP1LQ4L180 1135 aa13.59□□□□□ -0.23
VARS-227ENST00000489979 ZNF789Q5FWF6 425 aa13.59□□□□□ -0.23
VARS-227ENST00000489979 LDLRAP1Q5SW96 308 aa13.59□□□□□ -0.23
VARS-227ENST00000489979 ZFYVE27Q5T4F4 411 aa13.59□□□□□ -0.23
VARS-227ENST00000489979 METRNLQ641Q3 311 aa13.59□□□□□ -0.23
VARS-227ENST00000489979 HGSNATQ68CP4 663 aa13.59□□□□□ -0.23
VARS-227ENST00000489979 RAB43Q86YS6 212 aa13.59□□□□□ -0.23
VARS-227ENST00000489979 CARFQ8N187 725 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms