RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 TMEM71Q6P5X7 295 aa17■□□□□ 0.31
MDC1-206ENST00000489540 ZNF449Q6P9G9 518 aa17■□□□□ 0.31
MDC1-206ENST00000489540 MICALCLQ6ZW33 695 aa17■□□□□ 0.31
MDC1-206ENST00000489540 SLITRK4Q8IW52 837 aa17■□□□□ 0.31
MDC1-206ENST00000489540 MPP5Q8N3R9 675 aa17■□□□□ 0.31
MDC1-206ENST00000489540 CLDN19Q8N6F1 224 aa17■□□□□ 0.31
MDC1-206ENST00000489540 OR4D9Q8NGE8 314 aa17■□□□□ 0.31
MDC1-206ENST00000489540 SERPINB12Q96P63 405 aa17■□□□□ 0.31
MDC1-206ENST00000489540 NUDT22Q9BRQ3 303 aa17■□□□□ 0.31
MDC1-206ENST00000489540 EPB41L5Q9HCM4 733 aa17■□□□□ 0.31
MDC1-206ENST00000489540 CATSPERZQ9NTU4 200 aa17■□□□□ 0.31
MDC1-206ENST00000489540 SAMD15Q9P1V8 674 aa17■□□□□ 0.31
MDC1-206ENST00000489540 ZMIZ1Q9ULJ6 1067 aa17■□□□□ 0.31
MDC1-206ENST00000489540 PSMD13Q9UNM6 376 aa17■□□□□ 0.31
MDC1-206ENST00000489540 GOLGA8MH3BSY2 632 aa16.99■□□□□ 0.31
MDC1-206ENST00000489540 CD3EAPO15446 510 aaKnown RBP16.99■□□□□ 0.31
MDC1-206ENST00000489540 DXOO77932 396 aaKnown RBP16.99■□□□□ 0.31
MDC1-206ENST00000489540 FTH1P02794 183 aa16.99■□□□□ 0.31
MDC1-206ENST00000489540 OR56A5P0C7T3 313 aa16.99■□□□□ 0.31
MDC1-206ENST00000489540 PAMP19021 973 aa16.99■□□□□ 0.31
MDC1-206ENST00000489540 PPM1FP49593 454 aaPredicted RBP16.99■□□□□ 0.31
MDC1-206ENST00000489540 TTPAP49638 278 aa16.99■□□□□ 0.31
MDC1-206ENST00000489540 DR1Q01658 176 aa16.99■□□□□ 0.31
MDC1-206ENST00000489540 TRA2AQ13595 282 aaKnown RBP eCLIP16.99■□□□□ 0.314e-6■■□□□ 13.8
MDC1-206ENST00000489540 RNASEH2BQ5TBB1 312 aaKnown RBP16.99■□□□□ 0.31
MDC1-206ENST00000489540 CASC4Q6P4E1 433 aa16.99■□□□□ 0.31
MDC1-206ENST00000489540 WDR74Q6RFH5 385 aaPredicted RBP16.99■□□□□ 0.31
MDC1-206ENST00000489540 IGF2-ASQ6U949 168 aa16.99■□□□□ 0.31
MDC1-206ENST00000489540 SYT10Q6XYQ8 523 aa16.99■□□□□ 0.31
MDC1-206ENST00000489540 RAB11FIP2Q7L804 512 aa16.99■□□□□ 0.31
MDC1-206ENST00000489540 TMPRSS9Q7Z410 1059 aa16.99■□□□□ 0.31
MDC1-206ENST00000489540 PROSER1Q86XN7 944 aa16.99■□□□□ 0.31
MDC1-206ENST00000489540 ZFPM2Q8WW38 1151 aa16.99■□□□□ 0.31
MDC1-206ENST00000489540 MFSD3Q96ES6 412 aa16.99■□□□□ 0.31
MDC1-206ENST00000489540 CMKLR1Q99788 373 aa16.99■□□□□ 0.31
MDC1-206ENST00000489540 SEMA6CQ9H3T2 930 aa16.99■□□□□ 0.31
MDC1-206ENST00000489540 AKAP7Q9P0M2 348 aaPredicted RBP16.99■□□□□ 0.31
MDC1-206ENST00000489540 SATB2Q9UPW6 733 aa16.99■□□□□ 0.31
MDC1-206ENST00000489540 IGHV5-10-1A0A0J9YXX1 117 aa16.98■□□□□ 0.31
MDC1-206ENST00000489540 FAM237BA0A1B0GVD1 139 aa16.98■□□□□ 0.31
MDC1-206ENST00000489540 DNALI1O14645 258 aaPredicted RBP16.98■□□□□ 0.31
MDC1-206ENST00000489540 BRINP1O60477 761 aa16.98■□□□□ 0.31
MDC1-206ENST00000489540 VAPBO95292 243 aa16.98■□□□□ 0.31
MDC1-206ENST00000489540 POLBP06746 335 aa16.98■□□□□ 0.31
MDC1-206ENST00000489540 SLC35G4P0C7Q5 338 aa16.98■□□□□ 0.31
MDC1-206ENST00000489540 RBMS1P29558 406 aaKnown RBP16.98■□□□□ 0.31
MDC1-206ENST00000489540 MLLT3P42568 568 aaPredicted RBP16.98■□□□□ 0.31
MDC1-206ENST00000489540 MAGEA3P43357 314 aa16.98■□□□□ 0.31
MDC1-206ENST00000489540 LIMK2P53671 638 aa16.98■□□□□ 0.31
MDC1-206ENST00000489540 RPA4Q13156 261 aa16.98■□□□□ 0.31
MDC1-206ENST00000489540 C3orf38Q5JPI3 329 aa16.98■□□□□ 0.31
MDC1-206ENST00000489540 PHF19Q5T6S3 580 aa16.98■□□□□ 0.31
MDC1-206ENST00000489540 ZNF574Q6ZN55 896 aaPredicted RBP16.98■□□□□ 0.31
MDC1-206ENST00000489540 SDCCAG8Q86SQ7 713 aaPredicted RBP16.98■□□□□ 0.31
MDC1-206ENST00000489540 HOOK3Q86VS8 718 aa16.98■□□□□ 0.31
MDC1-206ENST00000489540 FBXO39Q8N4B4 442 aa16.98■□□□□ 0.31
MDC1-206ENST00000489540 NCSTNQ92542 709 aa16.98■□□□□ 0.31
MDC1-206ENST00000489540 ZNF578Q96N58 590 aaPredicted RBP16.98■□□□□ 0.31
MDC1-206ENST00000489540 WWP1Q9H0M0 922 aa16.98■□□□□ 0.31
MDC1-206ENST00000489540 PDP2Q9P2J9 529 aa16.98■□□□□ 0.31
MDC1-206ENST00000489540 FAM8A1Q9UBU6 413 aa16.98■□□□□ 0.31
MDC1-206ENST00000489540 HEBP2Q9Y5Z4 205 aa16.98■□□□□ 0.31
MDC1-206ENST00000489540 PRSS21Q9Y6M0 314 aa16.98■□□□□ 0.31
MDC1-206ENST00000489540 TAF4O00268 1085 aa16.97■□□□□ 0.31
MDC1-206ENST00000489540 PLD2O14939 933 aa16.97■□□□□ 0.31
MDC1-206ENST00000489540 HGSO14964 777 aaPredicted RBP16.97■□□□□ 0.31
MDC1-206ENST00000489540 PFDN6O15212 129 aa16.97■□□□□ 0.31
MDC1-206ENST00000489540 OR1I1O60431 355 aa16.97■□□□□ 0.31
MDC1-206ENST00000489540 MTHFD1P11586 935 aaKnown RBP16.97■□□□□ 0.31
MDC1-206ENST00000489540 HOXB3P14651 431 aaPredicted RBP16.97■□□□□ 0.31
MDC1-206ENST00000489540 AMD1P17707 334 aa16.97■□□□□ 0.31
MDC1-206ENST00000489540 ERVPABLB-1P60509 514 aa16.97■□□□□ 0.31
MDC1-206ENST00000489540 PLOD1Q02809 727 aaPredicted RBP16.97■□□□□ 0.31
MDC1-206ENST00000489540 CFHR1Q03591 330 aa16.97■□□□□ 0.31
MDC1-206ENST00000489540 DHX34Q14147 1143 aaKnown RBP16.97■□□□□ 0.31
MDC1-206ENST00000489540 ZNF658BQ4V348 819 aaPredicted RBP16.97■□□□□ 0.31
MDC1-206ENST00000489540 KIAA0930Q6ICG6 404 aaPredicted RBP16.97■□□□□ 0.31
MDC1-206ENST00000489540 CAPRIN2Q6IMN6 1127 aaKnown RBP16.97■□□□□ 0.31
MDC1-206ENST00000489540 MRNIPQ6NTE8 343 aa16.97■□□□□ 0.31
MDC1-206ENST00000489540 CES3Q6UWW8 571 aa16.97■□□□□ 0.31
MDC1-206ENST00000489540 JAMLQ86YT9 394 aa16.97■□□□□ 0.31
MDC1-206ENST00000489540 PLXDC1Q8IUK5 500 aa16.97■□□□□ 0.31
MDC1-206ENST00000489540 FGF11Q92914 225 aa16.97■□□□□ 0.31
MDC1-206ENST00000489540 C12orf66Q96MD2 445 aa16.97■□□□□ 0.31
MDC1-206ENST00000489540 SLC46A1Q96NT5 459 aa16.97■□□□□ 0.31
MDC1-206ENST00000489540 INSM2Q96T92 566 aaPredicted RBP16.97■□□□□ 0.31
MDC1-206ENST00000489540 TSSK1BQ9BXA7 367 aa16.97■□□□□ 0.31
MDC1-206ENST00000489540 TBC1D10AQ9BXI6 508 aa16.97■□□□□ 0.31
MDC1-206ENST00000489540 ZMYND15Q9H091 742 aa16.97■□□□□ 0.31
MDC1-206ENST00000489540 COG4Q9H9E3 785 aa16.97■□□□□ 0.31
MDC1-206ENST00000489540 IMP3Q9NV31 184 aaKnown RBP16.97■□□□□ 0.31
MDC1-206ENST00000489540 COLEC10Q9Y6Z7 277 aa16.97■□□□□ 0.31
MDC1-206ENST00000489540 A0A1W2PNU3 283 aaPredicted RBP16.96■□□□□ 0.31
MDC1-206ENST00000489540 SMAPO00193 183 aa16.96■□□□□ 0.31
MDC1-206ENST00000489540 IFRD1O00458 451 aaPredicted RBP16.96■□□□□ 0.31
MDC1-206ENST00000489540 LIN7AO14910 233 aaPredicted RBP16.96■□□□□ 0.31
MDC1-206ENST00000489540 NDUFS3O75489 264 aa16.96■□□□□ 0.31
MDC1-206ENST00000489540 UBXN7O94888 489 aa16.96■□□□□ 0.31
MDC1-206ENST00000489540 IVDP26440 423 aa16.96■□□□□ 0.31
MDC1-206ENST00000489540 ARNTP27540 789 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms