RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 HSP90B2PQ58FF3 399 aa16.8■□□□□ 0.28
VIM-205ENST00000485947 TRMT10BQ6PF06 316 aaKnown RBP16.8■□□□□ 0.28
VIM-205ENST00000485947 CES3Q6UWW8 571 aa16.8■□□□□ 0.28
VIM-205ENST00000485947 MARK2Q7KZI7 788 aaKnown RBP16.8■□□□□ 0.28
VIM-205ENST00000485947 KCNMB4Q86W47 210 aa16.8■□□□□ 0.28
VIM-205ENST00000485947 LRRC6Q86X45 466 aa16.8■□□□□ 0.28
VIM-205ENST00000485947 C17orf82Q86X59 251 aaPredicted RBP16.8■□□□□ 0.28
VIM-205ENST00000485947 LMNTD2Q8IXW0 634 aa16.8■□□□□ 0.28
VIM-205ENST00000485947 TTC30BQ8N4P2 665 aa16.8■□□□□ 0.28
VIM-205ENST00000485947 COX14Q96I36 57 aa16.8■□□□□ 0.28
VIM-205ENST00000485947 ZNF778Q96MU6 729 aa16.8■□□□□ 0.28
VIM-205ENST00000485947 DPEP2Q9H4A9 486 aa16.8■□□□□ 0.28
VIM-205ENST00000485947 FAM83DQ9H4H8 585 aa16.8■□□□□ 0.28
VIM-205ENST00000485947 NLE1Q9NVX2 485 aaPredicted RBP16.8■□□□□ 0.28
VIM-205ENST00000485947 NSMCE4AQ9NXX6 385 aa16.8■□□□□ 0.28
VIM-205ENST00000485947 MOSPD1Q9UJG1 213 aa16.8■□□□□ 0.28
VIM-205ENST00000485947 NAV2Q8IVL1 2488 aa16.8■□□□□ 0.28
VIM-205ENST00000485947 SCN8AQ9UQD0 1980 aa16.8■□□□□ 0.28
VIM-205ENST00000485947 LRP4O75096 1905 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 GPR89AB7ZAQ6 455 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 NOBOXO60393 691 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 CLDN7O95471 211 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 PIRTP0C851 137 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 GPR89BP0CG08 455 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 HADHAP40939 763 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 DCDC1P59894 354 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 KCTD16Q68DU8 428 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 PDZD3Q86UT5 571 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 OR13J1Q8NGT2 312 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 WDR36Q8NI36 951 aaKnown RBP16.79■□□□□ 0.28
VIM-205ENST00000485947 CALML6Q8TD86 181 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 EPS8L3Q8TE67 593 aaKnown RBP16.79■□□□□ 0.28
VIM-205ENST00000485947 SLC44A1Q8WWI5 657 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 CCDC74AQ96AQ1 378 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 TMEM159Q96B96 161 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 PGM2Q96G03 612 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 LIN37Q96GY3 246 aaPredicted RBP16.79■□□□□ 0.28
VIM-205ENST00000485947 TMEM74Q96NL1 305 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 GFM1Q96RP9 751 aaKnown RBP16.79■□□□□ 0.28
VIM-205ENST00000485947 PAFAH2Q99487 392 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 FAM167BQ9BTA0 163 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 DHRS4Q9BTZ2 278 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 GPR63Q9BZJ6 419 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 STMN4Q9H169 189 aaPredicted RBP16.79■□□□□ 0.28
VIM-205ENST00000485947 ZFYVE1Q9HBF4 777 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 TMBIM4Q9HC24 238 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 THSD1Q9NS62 852 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 C20orf96Q9NUD7 363 aaPredicted RBP16.79■□□□□ 0.28
VIM-205ENST00000485947 SIRPGQ9P1W8 387 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 ZFATQ9P243 1243 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 PSMC3IPQ9P2W1 217 aaPredicted RBP16.79■□□□□ 0.28
VIM-205ENST00000485947 LGALS13Q9UHV8 139 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 ZNF180Q9UJW8 692 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 SUFUQ9UMX1 484 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 PCDHB1Q9Y5F3 818 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 ENTPD2Q9Y5L3 495 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 ARL5AQ9Y689 179 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 IKBKGQ9Y6K9 419 aa16.79■□□□□ 0.28
VIM-205ENST00000485947 GOLGA8KD6RF30 607 aa16.78■□□□□ 0.28
VIM-205ENST00000485947 POC1B-GALNT4F8VUJ3 575 aa16.78■□□□□ 0.28
VIM-205ENST00000485947 H7C0S8 307 aa16.78■□□□□ 0.28
VIM-205ENST00000485947 INHBAP08476 426 aa16.78■□□□□ 0.28
VIM-205ENST00000485947 GCAP28676 217 aa16.78■□□□□ 0.28
VIM-205ENST00000485947 ATP5DP30049 168 aa16.78■□□□□ 0.28
VIM-205ENST00000485947 CCKBRP32239 447 aa16.78■□□□□ 0.28
VIM-205ENST00000485947 HMGCLP35914 325 aa16.78■□□□□ 0.28
VIM-205ENST00000485947 MSH2P43246 934 aa16.78■□□□□ 0.28
VIM-205ENST00000485947 ARCN1P48444 511 aaKnown RBP16.78■□□□□ 0.28
VIM-205ENST00000485947 GABREP78334 506 aa16.78■□□□□ 0.28
VIM-205ENST00000485947 PRAMEP78395 509 aa16.78■□□□□ 0.28
VIM-205ENST00000485947 NR1D2Q14995 579 aa16.78■□□□□ 0.28
VIM-205ENST00000485947 HENMT1Q5T8I9 393 aaKnown RBP16.78■□□□□ 0.28
VIM-205ENST00000485947 AGBL2Q5U5Z8 902 aa16.78■□□□□ 0.28
VIM-205ENST00000485947 ADGRD1Q6QNK2 874 aa16.78■□□□□ 0.28
VIM-205ENST00000485947 SLC26A11Q86WA9 606 aa16.78■□□□□ 0.28
VIM-205ENST00000485947 CTAGE3PQ8IX95 158 aa16.78■□□□□ 0.28
VIM-205ENST00000485947 ZNF248Q8NDW4 579 aa16.78■□□□□ 0.28
VIM-205ENST00000485947 DTX3LQ8TDB6 740 aa16.78■□□□□ 0.28
VIM-205ENST00000485947 SCAMP4Q969E2 229 aa16.78■□□□□ 0.28
VIM-205ENST00000485947 OR2M4Q96R27 311 aa16.78■□□□□ 0.28
VIM-205ENST00000485947 RIOK2Q9BVS4 552 aaKnown RBP16.78■□□□□ 0.28
VIM-205ENST00000485947 STRADBQ9C0K7 418 aa16.78■□□□□ 0.28
VIM-205ENST00000485947 LRRN3Q9H3W5 708 aa16.78■□□□□ 0.28
VIM-205ENST00000485947 PPANQ9NQ55 473 aaKnown RBP16.78■□□□□ 0.28
VIM-205ENST00000485947 EURLQ9NYK6 297 aa16.78■□□□□ 0.28
VIM-205ENST00000485947 SLC2A6Q9UGQ3 507 aa16.78■□□□□ 0.28
VIM-205ENST00000485947 PKP3Q9Y446 797 aa16.78■□□□□ 0.28
VIM-205ENST00000485947 CCDC187A0A096LP49 1063 aa16.77■□□□□ 0.28
VIM-205ENST00000485947 TLDC2A0PJX2 215 aa16.77■□□□□ 0.28
VIM-205ENST00000485947 CCDC78A2IDD5 438 aa16.77■□□□□ 0.28
VIM-205ENST00000485947 D6RAR5 112 aa16.77■□□□□ 0.28
VIM-205ENST00000485947 STX7O15400 261 aaKnown RBP16.77■□□□□ 0.28
VIM-205ENST00000485947 RGS16O15492 202 aaPredicted RBP16.77■□□□□ 0.28
VIM-205ENST00000485947 VAPBO95292 243 aa16.77■□□□□ 0.28
VIM-205ENST00000485947 SYF2O95926 243 aaKnown RBP16.77■□□□□ 0.28
VIM-205ENST00000485947 FUCA1P04066 466 aa16.77■□□□□ 0.28
VIM-205ENST00000485947 RBMS1P29558 406 aaKnown RBP16.77■□□□□ 0.28
VIM-205ENST00000485947 ABCG1P45844 678 aa16.77■□□□□ 0.28
VIM-205ENST00000485947 GPR3P46089 330 aa16.77■□□□□ 0.28
VIM-205ENST00000485947 GNPDA1P46926 289 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms