RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 SLC22A2O15244 555 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 EPB42P16452 691 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 CYP3A5P20815 502 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 MC4RP32245 332 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 HERVK_113P63132 956 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 NDUFA5Q16718 116 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 UBE2UQ5VVX9 321 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 PRR23CQ6ZRP0 262 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 SIDT2Q8NBJ9 832 aaKnown RBP13.36□□□□□ -0.27
USP42-206ENST00000479544 WDR36Q8NI36 951 aaKnown RBP13.36□□□□□ -0.27
USP42-206ENST00000479544 RSPH1Q8WYR4 309 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 RNFT2Q96EX2 444 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 PPP3R2Q96LZ3 170 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 ERVK-6Q9BXR3 956 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 H2AFY2Q9P0M6 372 aaPredicted RBP13.36□□□□□ -0.27
USP42-206ENST00000479544 ZNF624Q9P2J8 865 aaPredicted RBP13.36□□□□□ -0.27
USP42-206ENST00000479544 ZNF490Q9ULM2 529 aaPredicted RBP13.36□□□□□ -0.27
USP42-206ENST00000479544 LOC100130705A0A1B0GUX0 176 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 PRSS51A0A1B0GVH4 220 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 IL1BP01584 269 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 GDF5P43026 501 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 VEGFBP49765 207 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 ATN1P54259 1190 aaPredicted RBP13.35□□□□□ -0.27
USP42-206ENST00000479544 SPIBQ01892 262 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 SLC10A7Q0GE19 358 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 CDH18Q13634 790 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 HSF5Q4G112 596 aaPredicted RBP13.35□□□□□ -0.27
USP42-206ENST00000479544 FAM219BQ5XKK7 198 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 SULT1C3Q6IMI6 304 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 PLET1Q6UQ28 207 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 GLB1LQ6UWU2 654 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 B3GNT9Q6UX72 402 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 FAM151BQ6UXP7 276 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 CASP12Q6UXS9 341 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 PLPPR4Q7Z2D5 763 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 GALNT10Q86SR1 603 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 RAB43Q86YS6 212 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 GTPBP3Q969Y2 492 aaKnown RBP13.35□□□□□ -0.27
USP42-206ENST00000479544 CGREF1Q99674 301 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 SNTG1Q9NSN8 517 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 CLEC4AQ9UMR7 237 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 IRS2Q9Y4H2 1338 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 H0YC42 278 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 CPNE3O75131 537 aaKnown RBP13.35□□□□□ -0.27
USP42-206ENST00000479544 FUCA1P04066 466 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 ZNF26P17031 533 aaPredicted RBP13.35□□□□□ -0.27
USP42-206ENST00000479544 CAPN3P20807 821 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 AGXTP21549 392 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 TP53BP2Q13625 1128 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 C6orf141Q5SZD1 244 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 DCLRE1AQ6PJP8 1040 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 SERPINB11Q96P15 392 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 ZNF347Q96SE7 839 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 CNPPD1Q9BV87 410 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 NPLQ9BXD5 320 aaPredicted RBP13.35□□□□□ -0.27
USP42-206ENST00000479544 SPRTNQ9H040 489 aaPredicted RBP13.35□□□□□ -0.27
USP42-206ENST00000479544 SP140LQ9H930 580 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 ERVK-18Q9QC07 812 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 TRPC4Q9UBN4 977 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 PADI4Q9UM07 663 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 ITGB4P16144 1822 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 G6PDP11413 515 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 ZNF7P17097 686 aaPredicted RBP13.35□□□□□ -0.27
USP42-206ENST00000479544 DAOAP59103 153 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 SMARCB1Q12824 385 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 ARHGEF6Q15052 776 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 QPRTQ15274 297 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 SKIV2LQ15477 1246 aaKnown RBP13.35□□□□□ -0.27
USP42-206ENST00000479544 FAM117BQ6P1L5 589 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 HID1Q8IV36 788 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 CHERPQ8IWX8 916 aaKnown RBP13.35□□□□□ -0.27
USP42-206ENST00000479544 ZNF420Q8TAQ5 688 aaPredicted RBP13.35□□□□□ -0.27
USP42-206ENST00000479544 MYDGFQ969H8 173 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 TDRD1Q9BXT4 1180 aaKnown RBP13.35□□□□□ -0.27
USP42-206ENST00000479544 IRF2BPLQ9H1B7 796 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 KLHL1Q9NR64 748 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 UCKL1Q9NWZ5 548 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 DNAJB9Q9UBS3 223 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 FBXW11Q9UKB1 542 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 USP22Q9UPT9 525 aa13.35□□□□□ -0.27
USP42-206ENST00000479544 AP2A2O94973 939 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 ARRB2P32121 409 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 DPP6P42658 865 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 IRF8Q02556 426 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 STARD3Q14849 445 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 SMU1Q2TAY7 513 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 EIF3MQ7L2H7 374 aaKnown RBP13.34□□□□□ -0.27
USP42-206ENST00000479544 PACRGLQ8N7B6 248 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 TFAP2CQ92754 450 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 C1GALT1C1Q96EU7 318 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 DIRAS2Q96HU8 199 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 FEM1CQ96JP0 617 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 ZNF597Q96LX8 424 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 FAM126AQ9BYI3 521 aaPredicted RBP13.34□□□□□ -0.27
USP42-206ENST00000479544 ANKRD60Q9BZ19 345 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 ZCWPW2A0A1B0GU75 182 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 A0A1W2PP18 115 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 BEST1O76090 585 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 CNTN5O94779 1100 aa13.34□□□□□ -0.27
USP42-206ENST00000479544 RFX3P48380 749 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms