RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 EPN3Q9H201 632 aa6.87□□□□□ -1.31
HDAC3-207ENST00000475549 TRIT1Q9H3H1 467 aaKnown RBP6.87□□□□□ -1.31
HDAC3-207ENST00000475549 RSPH14Q9UHP6 348 aa6.87□□□□□ -1.31
HDAC3-207ENST00000475549 TUBD1Q9UJT1 453 aa6.87□□□□□ -1.31
HDAC3-207ENST00000475549 CROTQ9UKG9 612 aa6.87□□□□□ -1.31
HDAC3-207ENST00000475549 TRHDEQ9UKU6 1024 aa6.87□□□□□ -1.31
HDAC3-207ENST00000475549 PCDHA3Q9Y5H8 950 aa6.87□□□□□ -1.31
HDAC3-207ENST00000475549 HEMK1Q9Y5R4 338 aaPredicted RBP6.87□□□□□ -1.31
HDAC3-207ENST00000475549 KCNMB2Q9Y691 235 aa6.87□□□□□ -1.31
HDAC3-207ENST00000475549 DNMT3AQ9Y6K1 912 aaPredicted RBP6.87□□□□□ -1.31
HDAC3-207ENST00000475549 A0A0U1RQJ8 604 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 MGAT4DA6NG13 374 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 SOWAHDA6NJG2 315 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 HACD1B0YJ81 288 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 APOC4-APOC2K7ER74 178 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 CCL22O00626 93 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 KCNJ13O60928 360 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 RASSF9O75901 435 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 SRP72O76094 671 aaKnown RBP6.86□□□□□ -1.31
HDAC3-207ENST00000475549 NDUFA10O95299 355 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 PRAMEF1O95521 474 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 APOC2P02655 101 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 PDGFAP04085 211 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 NTRK1P04629 796 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 TPM1P09493 284 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 EBLN1P0CF75 366 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 PYGMP11217 842 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 MTHFD1P11586 935 aaKnown RBP6.86□□□□□ -1.31
HDAC3-207ENST00000475549 VCLP18206 1134 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 CTNNA1P35221 906 aaKnown RBP6.86□□□□□ -1.31
HDAC3-207ENST00000475549 DLSTP36957 453 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 CDKN1CP49918 316 aaPredicted RBP6.86□□□□□ -1.31
HDAC3-207ENST00000475549 OTUD4Q01804 1114 aaKnown RBP6.86□□□□□ -1.31
HDAC3-207ENST00000475549 SRSF1Q07955 248 aaKnown RBP eCLIP6.86□□□□□ -1.31
HDAC3-207ENST00000475549 ERV3-1Q14264 604 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 SPARCL1Q14515 664 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 TAF1AQ15573 450 aaPredicted RBP6.86□□□□□ -1.31
HDAC3-207ENST00000475549 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.86□□□□□ -1.31
HDAC3-207ENST00000475549 ODF2Q5BJF6 829 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 ANKRD20A2Q5SQ80 823 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 ANKRD20A1Q5TYW2 823 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 ANKRD20A3Q5VUR7 823 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 ZDHHC20Q5W0Z9 365 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 CAPRIN2Q6IMN6 1127 aaKnown RBP6.86□□□□□ -1.31
HDAC3-207ENST00000475549 LCN10Q6JVE6 187 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 DUS1LQ6P1R4 473 aaKnown RBP6.86□□□□□ -1.31
HDAC3-207ENST00000475549 FAM199XQ6PEV8 388 aaPredicted RBP6.86□□□□□ -1.31
HDAC3-207ENST00000475549 FBXO38Q6PIJ6 1188 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 DAAM2Q86T65 1068 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 RASGRP3Q8IV61 690 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 CCDC50Q8IVM0 306 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 RBM12BQ8IXT5 1001 aaKnown RBP6.86□□□□□ -1.31
HDAC3-207ENST00000475549 KLHDC8BQ8IXV7 354 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 LRRC57Q8N9N7 239 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 OR4K2Q8NGD2 314 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 OR2L2Q8NH16 312 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 CCDC110Q8TBZ0 833 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 APOBEC4Q8WW27 367 aaKnown RBP6.86□□□□□ -1.31
HDAC3-207ENST00000475549 KIAA1143Q96AT1 154 aaPredicted RBP6.86□□□□□ -1.31
HDAC3-207ENST00000475549 CXorf40BQ96DE9 158 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 ZDHHC12Q96GR4 267 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 TTC25Q96NG3 672 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 CATSPER2Q96P56 530 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 FICDQ9BVA6 458 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 LACRTQ9GZZ8 138 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 WWP1Q9H0M0 922 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 GBA3Q9H227 469 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 FAM96AQ9H5X1 160 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 LHX9Q9NQ69 397 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 HRASLS2Q9NWW9 162 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.86□□□□□ -1.31
HDAC3-207ENST00000475549 HACD3Q9P035 362 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 SLC24A2Q9UI40 661 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 FKBPLQ9UIM3 349 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 PKP3Q9Y446 797 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 EPN1Q9Y6I3 576 aaPredicted RBP6.86□□□□□ -1.31
HDAC3-207ENST00000475549 MAST4O15021 2626 aa6.86□□□□□ -1.31
HDAC3-207ENST00000475549 OR6C74A6NCV1 312 aa6.85□□□□□ -1.31
HDAC3-207ENST00000475549 OR5K3A6NET4 321 aa6.85□□□□□ -1.31
HDAC3-207ENST00000475549 C5orf60A6NFR6 353 aa6.85□□□□□ -1.31
HDAC3-207ENST00000475549 H7C0C1 242 aa6.85□□□□□ -1.31
HDAC3-207ENST00000475549 STX7O15400 261 aaKnown RBP6.85□□□□□ -1.31
HDAC3-207ENST00000475549 DDX3YO15523 660 aaKnown RBP6.85□□□□□ -1.31
HDAC3-207ENST00000475549 ARHGAP6O43182 974 aa6.85□□□□□ -1.31
HDAC3-207ENST00000475549 LDB2O43679 373 aa6.85□□□□□ -1.31
HDAC3-207ENST00000475549 KATNA1O75449 491 aa6.85□□□□□ -1.31
HDAC3-207ENST00000475549 DNAJB5O75953 348 aa6.85□□□□□ -1.31
HDAC3-207ENST00000475549 METTL18O95568 372 aa6.85□□□□□ -1.31
HDAC3-207ENST00000475549 POLBP06746 335 aa6.85□□□□□ -1.31
HDAC3-207ENST00000475549 PRSS56P0CW18 603 aa6.85□□□□□ -1.31
HDAC3-207ENST00000475549 TCN2P20062 427 aa6.85□□□□□ -1.31
HDAC3-207ENST00000475549 NR1D1P20393 614 aa6.85□□□□□ -1.31
HDAC3-207ENST00000475549 MSH3P20585 1137 aa6.85□□□□□ -1.31
HDAC3-207ENST00000475549 PTMSP20962 102 aa6.85□□□□□ -1.31
HDAC3-207ENST00000475549 LPOP22079 712 aaPredicted RBP6.85□□□□□ -1.31
HDAC3-207ENST00000475549 PSMB4P28070 264 aa6.85□□□□□ -1.31
HDAC3-207ENST00000475549 PDHA2P29803 388 aa6.85□□□□□ -1.31
HDAC3-207ENST00000475549 PBLDP30039 288 aaPredicted RBP6.85□□□□□ -1.31
HDAC3-207ENST00000475549 PTPN7P35236 360 aa6.85□□□□□ -1.31
HDAC3-207ENST00000475549 CASRP41180 1078 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms