RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 B8ZZF3 427 aa18.17■□□□□ 0.5
COL7A1-209ENST00000474432 POLR1CO15160 346 aaPredicted RBP18.17■□□□□ 0.5
COL7A1-209ENST00000474432 STK17BO94768 372 aa18.17■□□□□ 0.5
COL7A1-209ENST00000474432 STK10O94804 968 aaKnown RBP18.17■□□□□ 0.5
COL7A1-209ENST00000474432 ZNF28P17035 718 aa18.17■□□□□ 0.5
COL7A1-209ENST00000474432 MSH3P20585 1137 aa18.17■□□□□ 0.5
COL7A1-209ENST00000474432 CETN2P41208 172 aa18.17■□□□□ 0.5
COL7A1-209ENST00000474432 HALP42357 657 aa18.17■□□□□ 0.5
COL7A1-209ENST00000474432 SEPHS1P49903 392 aa18.17■□□□□ 0.5
COL7A1-209ENST00000474432 KIF5AQ12840 1032 aa18.17■□□□□ 0.5
COL7A1-209ENST00000474432 LONRF2Q1L5Z9 754 aa18.17■□□□□ 0.5
COL7A1-209ENST00000474432 PARP6Q2NL67 630 aa18.17■□□□□ 0.5
COL7A1-209ENST00000474432 BCL7AQ4VC05 210 aa18.17■□□□□ 0.5
COL7A1-209ENST00000474432 NLGN4XQ8N0W4 816 aa18.17■□□□□ 0.5
COL7A1-209ENST00000474432 LILRA3Q8N6C8 439 aaPredicted RBP18.17■□□□□ 0.5
COL7A1-209ENST00000474432 FAM71DQ8N9W8 422 aa18.17■□□□□ 0.5
COL7A1-209ENST00000474432 SPDYE1Q8NFV5 336 aaPredicted RBP18.17■□□□□ 0.5
COL7A1-209ENST00000474432 NLGN4YQ8NFZ3 816 aaPredicted RBP18.17■□□□□ 0.5
COL7A1-209ENST00000474432 OR2L2Q8NH16 312 aa18.17■□□□□ 0.5
COL7A1-209ENST00000474432 ZNF514Q96K75 400 aaPredicted RBP18.17■□□□□ 0.5
COL7A1-209ENST00000474432 LINC00615Q96LM1 132 aaPredicted RBP18.17■□□□□ 0.5
COL7A1-209ENST00000474432 FAM96AQ9H5X1 160 aa18.17■□□□□ 0.5
COL7A1-209ENST00000474432 IMPACTQ9P2X3 320 aa18.17■□□□□ 0.5
COL7A1-209ENST00000474432 CRTAMO95727 393 aa18.16■□□□□ 0.5
COL7A1-209ENST00000474432 FAM87AP0C7U9 286 aa18.16■□□□□ 0.5
COL7A1-209ENST00000474432 MTHFD1P11586 935 aaKnown RBP18.16■□□□□ 0.5
COL7A1-209ENST00000474432 MAP4P27816 1152 aaKnown RBP18.16■□□□□ 0.5
COL7A1-209ENST00000474432 PBLDP30039 288 aaPredicted RBP18.16■□□□□ 0.5
COL7A1-209ENST00000474432 AKT1P31749 480 aa18.16■□□□□ 0.5
COL7A1-209ENST00000474432 CDKN1CP49918 316 aaPredicted RBP18.16■□□□□ 0.5
COL7A1-209ENST00000474432 TMPRSS15P98073 1019 aa18.16■□□□□ 0.5
COL7A1-209ENST00000474432 ZNF658BQ4V348 819 aaPredicted RBP18.16■□□□□ 0.5
COL7A1-209ENST00000474432 DUS1LQ6P1R4 473 aaKnown RBP18.16■□□□□ 0.5
COL7A1-209ENST00000474432 FAM92BQ6ZTR7 304 aa18.16■□□□□ 0.5
COL7A1-209ENST00000474432 UNC5BQ8IZJ1 945 aa18.16■□□□□ 0.5
COL7A1-209ENST00000474432 NXPE1Q8N323 547 aa18.16■□□□□ 0.5
COL7A1-209ENST00000474432 ZSCAN1Q8NBB4 408 aa18.16■□□□□ 0.5
COL7A1-209ENST00000474432 TTC13Q8NBP0 860 aa18.16■□□□□ 0.5
COL7A1-209ENST00000474432 SPC24Q8NBT2 197 aa18.16■□□□□ 0.5
COL7A1-209ENST00000474432 RNF31Q96EP0 1072 aa18.16■□□□□ 0.5
COL7A1-209ENST00000474432 SLC45A3Q96JT2 553 aa18.16■□□□□ 0.5
COL7A1-209ENST00000474432 WWP1Q9H0M0 922 aa18.16■□□□□ 0.5
COL7A1-209ENST00000474432 IL17BQ9UHF5 180 aa18.16■□□□□ 0.5
COL7A1-209ENST00000474432 CFAP20Q9Y6A4 193 aaKnown RBP18.16■□□□□ 0.5
COL7A1-209ENST00000474432 BSNQ9UPA5 3926 aa18.16■□□□□ 0.5
COL7A1-209ENST00000474432 PIKFYVEQ9Y2I7 2098 aa18.16■□□□□ 0.5
COL7A1-209ENST00000474432 SPTA1P02549 2419 aa18.15■□□□□ 0.5
COL7A1-209ENST00000474432 IGLV3-16A0A075B6K0 115 aa18.15■□□□□ 0.5
COL7A1-209ENST00000474432 TRBV5-4A0A0C4DH59 114 aa18.15■□□□□ 0.5
COL7A1-209ENST00000474432 PRSS56P0CW18 603 aa18.15■□□□□ 0.5
COL7A1-209ENST00000474432 TPH1P17752 444 aa18.15■□□□□ 0.5
COL7A1-209ENST00000474432 PSMA3P25788 255 aa18.15■□□□□ 0.5
COL7A1-209ENST00000474432 CACHD1Q5VU97 1274 aa18.15■□□□□ 0.5
COL7A1-209ENST00000474432 CAPRIN2Q6IMN6 1127 aaKnown RBP18.15■□□□□ 0.5
COL7A1-209ENST00000474432 SYCE1Q8N0S2 351 aa18.15■□□□□ 0.5
COL7A1-209ENST00000474432 UBL4BQ8N7F7 174 aa18.15■□□□□ 0.5
COL7A1-209ENST00000474432 DNAJC1Q96KC8 554 aaKnown RBP18.15■□□□□ 0.5
COL7A1-209ENST00000474432 RMDN2Q96LZ7 410 aa18.15■□□□□ 0.5
COL7A1-209ENST00000474432 PPP1R2P1Q96PQ5 205 aa18.15■□□□□ 0.5
COL7A1-209ENST00000474432 TMEM121Q9BTD3 319 aa18.15■□□□□ 0.5
COL7A1-209ENST00000474432 FEZ2Q9UHY8 353 aaPredicted RBP18.15■□□□□ 0.5
COL7A1-209ENST00000474432 IGHV5-51A0A0C4DH38 117 aa18.14■□□□□ 0.49
COL7A1-209ENST00000474432 GOLGA6L3A6NEY3 463 aa18.14■□□□□ 0.49
COL7A1-209ENST00000474432 H7C0S8 307 aa18.14■□□□□ 0.49
COL7A1-209ENST00000474432 TERTO14746 1132 aaKnown RBP18.14■□□□□ 0.49
COL7A1-209ENST00000474432 NKX2-8O15522 239 aa18.14■□□□□ 0.49
COL7A1-209ENST00000474432 NELFEP18615 380 aaKnown RBP18.14■□□□□ 0.49
COL7A1-209ENST00000474432 F8A1P23610 371 aa18.14■□□□□ 0.49
COL7A1-209ENST00000474432 PRLHRP49683 370 aa18.14■□□□□ 0.49
COL7A1-209ENST00000474432 PDE1BQ01064 536 aa18.14■□□□□ 0.49
COL7A1-209ENST00000474432 FOXM1Q08050 763 aa18.14■□□□□ 0.49
COL7A1-209ENST00000474432 ABHD18Q0P651 414 aa18.14■□□□□ 0.49
COL7A1-209ENST00000474432 MAP7Q14244 749 aa18.14■□□□□ 0.49
COL7A1-209ENST00000474432 IRGCQ6NXR0 463 aa18.14■□□□□ 0.49
COL7A1-209ENST00000474432 SNX20Q7Z614 316 aa18.14■□□□□ 0.49
COL7A1-209ENST00000474432 ATG4AQ8WYN0 398 aa18.14■□□□□ 0.49
COL7A1-209ENST00000474432 ZDHHC12Q96GR4 267 aa18.14■□□□□ 0.49
COL7A1-209ENST00000474432 SLC41A2Q96JW4 573 aa18.14■□□□□ 0.49
COL7A1-209ENST00000474432 OR6C1Q96RD1 312 aa18.14■□□□□ 0.49
COL7A1-209ENST00000474432 STARD5Q9NSY2 213 aa18.14■□□□□ 0.49
COL7A1-209ENST00000474432 IMP3Q9NV31 184 aaKnown RBP18.14■□□□□ 0.49
COL7A1-209ENST00000474432 ACSL5Q9ULC5 683 aa18.14■□□□□ 0.49
COL7A1-209ENST00000474432 GOLGA6L9A6NEM1 432 aa18.13■□□□□ 0.49
COL7A1-209ENST00000474432 ZNF189O75820 626 aaPredicted RBP18.13■□□□□ 0.49
COL7A1-209ENST00000474432 RASSF9O75901 435 aa18.13■□□□□ 0.49
COL7A1-209ENST00000474432 TIAF1O95411 115 aa18.13■□□□□ 0.49
COL7A1-209ENST00000474432 FGF5P12034 268 aa18.13■□□□□ 0.49
COL7A1-209ENST00000474432 MC4RP32245 332 aa18.13■□□□□ 0.49
COL7A1-209ENST00000474432 HADHAP40939 763 aa18.13■□□□□ 0.49
COL7A1-209ENST00000474432 STAT5AP42229 794 aa18.13■□□□□ 0.49
COL7A1-209ENST00000474432 IL11RAQ14626 422 aa18.13■□□□□ 0.49
COL7A1-209ENST00000474432 CERS6Q6ZMG9 384 aa18.13■□□□□ 0.49
COL7A1-209ENST00000474432 ARHGEF18Q6ZSZ5 1173 aa18.13■□□□□ 0.49
COL7A1-209ENST00000474432 PIANPQ8IYJ0 282 aa18.13■□□□□ 0.49
COL7A1-209ENST00000474432 ULK4Q96C45 1275 aa18.13■□□□□ 0.49
COL7A1-209ENST00000474432 CDKN2AIPNLQ96HQ2 116 aa18.13■□□□□ 0.49
COL7A1-209ENST00000474432 C12orf66Q96MD2 445 aa18.13■□□□□ 0.49
COL7A1-209ENST00000474432 GPN2Q9H9Y4 310 aaPredicted RBP18.13■□□□□ 0.49
COL7A1-209ENST00000474432 NLE1Q9NVX2 485 aaPredicted RBP18.13■□□□□ 0.49
COL7A1-209ENST00000474432 PIH1D1Q9NWS0 290 aaKnown RBP18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms