RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 ADNPQ9H2P0 1102 aa18.4■□□□□ 0.54
CCDC88B-206ENST00000473405 TRIT1Q9H3H1 467 aaKnown RBP18.4■□□□□ 0.54
CCDC88B-206ENST00000473405 FKBPLQ9UIM3 349 aa18.4■□□□□ 0.54
CCDC88B-206ENST00000473405 HEMK1Q9Y5R4 338 aaPredicted RBP18.4■□□□□ 0.54
CCDC88B-206ENST00000473405 DNMT3AQ9Y6K1 912 aaPredicted RBP18.4■□□□□ 0.54
CCDC88B-206ENST00000473405 NBASA2RRP1 2371 aa18.39■□□□□ 0.53
CCDC88B-206ENST00000473405 TERTO14746 1132 aaKnown RBP18.39■□□□□ 0.53
CCDC88B-206ENST00000473405 KCNN4O15554 427 aa18.39■□□□□ 0.53
CCDC88B-206ENST00000473405 SGTAO43765 313 aa18.39■□□□□ 0.53
CCDC88B-206ENST00000473405 SRP72O76094 671 aaKnown RBP18.39■□□□□ 0.53
CCDC88B-206ENST00000473405 PRKAR1AP10644 381 aa18.39■□□□□ 0.53
CCDC88B-206ENST00000473405 NELFEP18615 380 aaKnown RBP18.39■□□□□ 0.53
CCDC88B-206ENST00000473405 F8A1P23610 371 aa18.39■□□□□ 0.53
CCDC88B-206ENST00000473405 OAS2P29728 719 aaKnown RBP18.39■□□□□ 0.53
CCDC88B-206ENST00000473405 XIAPP98170 497 aa18.39■□□□□ 0.53
CCDC88B-206ENST00000473405 KCNAB2Q13303 367 aa18.39■□□□□ 0.53
CCDC88B-206ENST00000473405 IL11RAQ14626 422 aa18.39■□□□□ 0.53
CCDC88B-206ENST00000473405 CACHD1Q5VU97 1274 aa18.39■□□□□ 0.53
CCDC88B-206ENST00000473405 DENND5AQ6IQ26 1287 aa18.39■□□□□ 0.53
CCDC88B-206ENST00000473405 TMTC1Q8IUR5 882 aa18.39■□□□□ 0.53
CCDC88B-206ENST00000473405 ESX1Q8N693 406 aa18.39■□□□□ 0.53
CCDC88B-206ENST00000473405 ACRBPQ8NEB7 543 aa18.39■□□□□ 0.53
CCDC88B-206ENST00000473405 CCDC110Q8TBZ0 833 aa18.39■□□□□ 0.53
CCDC88B-206ENST00000473405 STARD8Q92502 1023 aa18.39■□□□□ 0.53
CCDC88B-206ENST00000473405 ZDHHC12Q96GR4 267 aa18.39■□□□□ 0.53
CCDC88B-206ENST00000473405 ZNF514Q96K75 400 aaPredicted RBP18.39■□□□□ 0.53
CCDC88B-206ENST00000473405 SPATA13Q96N96 652 aa18.39■□□□□ 0.53
CCDC88B-206ENST00000473405 CATSPER2Q96P56 530 aa18.39■□□□□ 0.53
CCDC88B-206ENST00000473405 SLC25A18Q9H1K4 315 aa18.39■□□□□ 0.53
CCDC88B-206ENST00000473405 SEMA5BQ9P283 1151 aa18.39■□□□□ 0.53
CCDC88B-206ENST00000473405 CFAP20Q9Y6A4 193 aaKnown RBP18.39■□□□□ 0.53
CCDC88B-206ENST00000473405 PIKFYVEQ9Y2I7 2098 aa18.38■□□□□ 0.53
CCDC88B-206ENST00000473405 IGHV5-51A0A0C4DH38 117 aa18.38■□□□□ 0.53
CCDC88B-206ENST00000473405 GRID2IPA4D2P6 1211 aa18.38■□□□□ 0.53
CCDC88B-206ENST00000473405 GOLGA6L3A6NEY3 463 aa18.38■□□□□ 0.53
CCDC88B-206ENST00000473405 C5orf60A6NFR6 353 aa18.38■□□□□ 0.53
CCDC88B-206ENST00000473405 C2orf81A6NN90 581 aa18.38■□□□□ 0.53
CCDC88B-206ENST00000473405 AGAP14A8MT82 685 aa18.38■□□□□ 0.53
CCDC88B-206ENST00000473405 SUV39H1O43463 412 aa18.38■□□□□ 0.53
CCDC88B-206ENST00000473405 PYGMP11217 842 aa18.38■□□□□ 0.53
CCDC88B-206ENST00000473405 MTHFD1P11586 935 aaKnown RBP18.38■□□□□ 0.53
CCDC88B-206ENST00000473405 FGF5P12034 268 aa18.38■□□□□ 0.53
CCDC88B-206ENST00000473405 MSH3P20585 1137 aa18.38■□□□□ 0.53
CCDC88B-206ENST00000473405 ZNF140P52738 457 aaPredicted RBP18.38■□□□□ 0.53
CCDC88B-206ENST00000473405 RWDD2BP57060 319 aa18.38■□□□□ 0.53
CCDC88B-206ENST00000473405 LONRF2Q1L5Z9 754 aa18.38■□□□□ 0.53
CCDC88B-206ENST00000473405 DUS1LQ6P1R4 473 aaKnown RBP18.38■□□□□ 0.53
CCDC88B-206ENST00000473405 KLHDC8BQ8IXV7 354 aa18.38■□□□□ 0.53
CCDC88B-206ENST00000473405 GALNT6Q8NCL4 622 aa18.38■□□□□ 0.53
CCDC88B-206ENST00000473405 OR13C4Q8NGS5 318 aa18.38■□□□□ 0.53
CCDC88B-206ENST00000473405 SLC41A2Q96JW4 573 aa18.38■□□□□ 0.53
CCDC88B-206ENST00000473405 FERMT1Q9BQL6 677 aa18.38■□□□□ 0.53
CCDC88B-206ENST00000473405 EFHD1Q9BUP0 239 aa18.38■□□□□ 0.53
CCDC88B-206ENST00000473405 TRIM4Q9C037 500 aa18.38■□□□□ 0.53
CCDC88B-206ENST00000473405 RBSNQ9H1K0 784 aa18.38■□□□□ 0.53
CCDC88B-206ENST00000473405 ASB8Q9H765 288 aa18.38■□□□□ 0.53
CCDC88B-206ENST00000473405 IMP3Q9NV31 184 aaKnown RBP18.38■□□□□ 0.53
CCDC88B-206ENST00000473405 TUBD1Q9UJT1 453 aa18.38■□□□□ 0.53
CCDC88B-206ENST00000473405 AAR2Q9Y312 384 aaKnown RBP18.38■□□□□ 0.53
CCDC88B-206ENST00000473405 MRPS18BQ9Y676 258 aaKnown RBP18.38■□□□□ 0.53
CCDC88B-206ENST00000473405 RPS6KL1Q9Y6S9 549 aa18.38■□□□□ 0.53
CCDC88B-206ENST00000473405 MGAT4DA6NG13 374 aa18.37■□□□□ 0.53
CCDC88B-206ENST00000473405 KIAA0754O94854 1291 aa18.37■□□□□ 0.53
CCDC88B-206ENST00000473405 CCR10P46092 362 aa18.37■□□□□ 0.53
CCDC88B-206ENST00000473405 BCL7AQ4VC05 210 aa18.37■□□□□ 0.53
CCDC88B-206ENST00000473405 ATP1A1-AS1Q5TC04 95 aa18.37■□□□□ 0.53
CCDC88B-206ENST00000473405 DARS2Q6PI48 645 aaKnown RBP18.37■□□□□ 0.53
CCDC88B-206ENST00000473405 SPDYE1Q8NFV5 336 aaPredicted RBP18.37■□□□□ 0.53
CCDC88B-206ENST00000473405 OR2L2Q8NH16 312 aa18.37■□□□□ 0.53
CCDC88B-206ENST00000473405 ELMO2Q96JJ3 720 aa18.37■□□□□ 0.53
CCDC88B-206ENST00000473405 INSM2Q96T92 566 aaPredicted RBP18.37■□□□□ 0.53
CCDC88B-206ENST00000473405 WWP1Q9H0M0 922 aa18.37■□□□□ 0.53
CCDC88B-206ENST00000473405 OR5K3A6NET4 321 aa18.36■□□□□ 0.53
CCDC88B-206ENST00000473405 STK10O94804 968 aaKnown RBP18.36■□□□□ 0.53
CCDC88B-206ENST00000473405 TJP3O95049 919 aa18.36■□□□□ 0.53
CCDC88B-206ENST00000473405 IPO7O95373 1038 aaKnown RBP18.36■□□□□ 0.53
CCDC88B-206ENST00000473405 WISP1O95388 367 aa18.36■□□□□ 0.53
CCDC88B-206ENST00000473405 TIAF1O95411 115 aa18.36■□□□□ 0.53
CCDC88B-206ENST00000473405 VAV2P52735 878 aa18.36■□□□□ 0.53
CCDC88B-206ENST00000473405 NAP1L1P55209 391 aaKnown RBP18.36■□□□□ 0.53
CCDC88B-206ENST00000473405 PRPSAP1Q14558 356 aa18.36■□□□□ 0.53
CCDC88B-206ENST00000473405 KCNAB1Q14722 419 aa18.36■□□□□ 0.53
CCDC88B-206ENST00000473405 PLCL1Q15111 1095 aa18.36■□□□□ 0.53
CCDC88B-206ENST00000473405 LARP7Q4G0J3 582 aaKnown RBP eCLIP18.36■□□□□ 0.53
CCDC88B-206ENST00000473405 CRTC2Q53ET0 693 aaPredicted RBP18.36■□□□□ 0.53
CCDC88B-206ENST00000473405 C6orf15Q6UXA7 325 aaPredicted RBP18.36■□□□□ 0.53
CCDC88B-206ENST00000473405 MICALCLQ6ZW33 695 aa18.36■□□□□ 0.53
CCDC88B-206ENST00000473405 RASGRP3Q8IV61 690 aa18.36■□□□□ 0.53
CCDC88B-206ENST00000473405 LILRA3Q8N6C8 439 aaPredicted RBP18.36■□□□□ 0.53
CCDC88B-206ENST00000473405 LINC00615Q96LM1 132 aaPredicted RBP18.36■□□□□ 0.53
CCDC88B-206ENST00000473405 TBL1YQ9BQ87 522 aa18.36■□□□□ 0.53
CCDC88B-206ENST00000473405 CLMPQ9H6B4 373 aa18.36■□□□□ 0.53
CCDC88B-206ENST00000473405 ARNT2Q9HBZ2 717 aa18.36■□□□□ 0.53
CCDC88B-206ENST00000473405 FAM8A1Q9UBU6 413 aa18.36■□□□□ 0.53
CCDC88B-206ENST00000473405 CROTQ9UKG9 612 aa18.36■□□□□ 0.53
CCDC88B-206ENST00000473405 CCL22O00626 93 aa18.35■□□□□ 0.53
CCDC88B-206ENST00000473405 LDB2O43679 373 aa18.35■□□□□ 0.53
CCDC88B-206ENST00000473405 SPAG6O75602 509 aa18.35■□□□□ 0.53
CCDC88B-206ENST00000473405 CRTAMO95727 393 aa18.35■□□□□ 0.53
CCDC88B-206ENST00000473405 FOLR1P15328 257 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms