RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 ARL5AQ9Y689 179 aa19.34■□□□□ 0.69
COL9A3-210ENST00000472880 GOLGA6L3A6NEY3 463 aa19.33■□□□□ 0.68
COL9A3-210ENST00000472880 KATNA1O75449 491 aa19.33■□□□□ 0.68
COL9A3-210ENST00000472880 MTHFD1P11586 935 aaKnown RBP19.33■□□□□ 0.68
COL9A3-210ENST00000472880 RBL1P28749 1068 aa19.33■□□□□ 0.68
COL9A3-210ENST00000472880 CA5AP35218 305 aa19.33■□□□□ 0.68
COL9A3-210ENST00000472880 ARL4DP49703 201 aa19.33■□□□□ 0.68
COL9A3-210ENST00000472880 DET1Q7L5Y6 550 aa19.33■□□□□ 0.68
COL9A3-210ENST00000472880 TC2NQ8N9U0 490 aa19.33■□□□□ 0.68
COL9A3-210ENST00000472880 ZNF398Q8TD17 642 aa19.33■□□□□ 0.68
COL9A3-210ENST00000472880 KRT35Q92764 455 aa19.33■□□□□ 0.68
COL9A3-210ENST00000472880 RARRES3Q9UL19 164 aa19.33■□□□□ 0.68
COL9A3-210ENST00000472880 TFR2Q9UP52 801 aa19.33■□□□□ 0.68
COL9A3-210ENST00000472880 PCDHA13Q9Y5I0 950 aa19.33■□□□□ 0.68
COL9A3-210ENST00000472880 IGHV5-51A0A0C4DH38 117 aa19.32■□□□□ 0.68
COL9A3-210ENST00000472880 C2orf81A6NN90 581 aa19.32■□□□□ 0.68
COL9A3-210ENST00000472880 LCA5LO95447 670 aa19.32■□□□□ 0.68
COL9A3-210ENST00000472880 AGTP01019 485 aa19.32■□□□□ 0.68
COL9A3-210ENST00000472880 LPOP22079 712 aaPredicted RBP19.32■□□□□ 0.68
COL9A3-210ENST00000472880 CTNNA2P26232 953 aa19.32■□□□□ 0.68
COL9A3-210ENST00000472880 CYLC1P35663 651 aaPredicted RBP19.32■□□□□ 0.68
COL9A3-210ENST00000472880 CASRP41180 1078 aa19.32■□□□□ 0.68
COL9A3-210ENST00000472880 ERV3-1Q14264 604 aa19.32■□□□□ 0.68
COL9A3-210ENST00000472880 PTPRCAPQ14761 206 aa19.32■□□□□ 0.68
COL9A3-210ENST00000472880 TAF1AQ15573 450 aaPredicted RBP19.32■□□□□ 0.68
COL9A3-210ENST00000472880 LACTB2Q53H82 288 aaPredicted RBP19.32■□□□□ 0.68
COL9A3-210ENST00000472880 DNTTIP2Q5QJE6 756 aaKnown RBP19.32■□□□□ 0.68
COL9A3-210ENST00000472880 SARM1Q6SZW1 724 aa19.32■□□□□ 0.68
COL9A3-210ENST00000472880 CCDC170Q8IYT3 715 aa19.32■□□□□ 0.68
COL9A3-210ENST00000472880 BEND7Q8N7W2 519 aaPredicted RBP19.32■□□□□ 0.68
COL9A3-210ENST00000472880 OR4K2Q8NGD2 314 aa19.32■□□□□ 0.68
COL9A3-210ENST00000472880 ABHD17AQ96GS6 310 aa19.32■□□□□ 0.68
COL9A3-210ENST00000472880 SLC41A2Q96JW4 573 aa19.32■□□□□ 0.68
COL9A3-210ENST00000472880 C12orf66Q96MD2 445 aa19.32■□□□□ 0.68
COL9A3-210ENST00000472880 CD180Q99467 661 aa19.32■□□□□ 0.68
COL9A3-210ENST00000472880 TRIM5Q9C035 493 aa19.32■□□□□ 0.68
COL9A3-210ENST00000472880 WWP1Q9H0M0 922 aa19.32■□□□□ 0.68
COL9A3-210ENST00000472880 C10orf88Q9H8K7 445 aa19.32■□□□□ 0.68
COL9A3-210ENST00000472880 SEMA5BQ9P283 1151 aa19.32■□□□□ 0.68
COL9A3-210ENST00000472880 FAM8A1Q9UBU6 413 aa19.32■□□□□ 0.68
COL9A3-210ENST00000472880 PADI1Q9ULC6 663 aa19.32■□□□□ 0.68
COL9A3-210ENST00000472880 POLHQ9Y253 713 aa19.32■□□□□ 0.68
COL9A3-210ENST00000472880 CFAP20Q9Y6A4 193 aaKnown RBP19.32■□□□□ 0.68
COL9A3-210ENST00000472880 KLHL33A6NCF5 533 aa19.31■□□□□ 0.68
COL9A3-210ENST00000472880 TLCD2A6NGC4 264 aa19.31■□□□□ 0.68
COL9A3-210ENST00000472880 STK10O94804 968 aaKnown RBP19.31■□□□□ 0.68
COL9A3-210ENST00000472880 SLC35G4P0C7Q5 338 aa19.31■□□□□ 0.68
COL9A3-210ENST00000472880 COPS2P61201 443 aa19.31■□□□□ 0.68
COL9A3-210ENST00000472880 ACY1Q03154 408 aa19.31■□□□□ 0.68
COL9A3-210ENST00000472880 DNASE1L3Q13609 305 aa19.31■□□□□ 0.68
COL9A3-210ENST00000472880 PRPSAP1Q14558 356 aa19.31■□□□□ 0.68
COL9A3-210ENST00000472880 KCNAB1Q14722 419 aa19.31■□□□□ 0.68
COL9A3-210ENST00000472880 METRNLQ641Q3 311 aa19.31■□□□□ 0.68
COL9A3-210ENST00000472880 OOSP2Q86WS3 158 aa19.31■□□□□ 0.68
COL9A3-210ENST00000472880 KMT5CQ86Y97 462 aa19.31■□□□□ 0.68
COL9A3-210ENST00000472880 CDKL3Q8IVW4 592 aaPredicted RBP19.31■□□□□ 0.68
COL9A3-210ENST00000472880 OR2L2Q8NH16 312 aa19.31■□□□□ 0.68
COL9A3-210ENST00000472880 MAP3K3Q99759 626 aa19.31■□□□□ 0.68
COL9A3-210ENST00000472880 GORASP1Q9BQQ3 440 aa19.31■□□□□ 0.68
COL9A3-210ENST00000472880 ASB8Q9H765 288 aa19.31■□□□□ 0.68
COL9A3-210ENST00000472880 LHX9Q9NQ69 397 aa19.31■□□□□ 0.68
COL9A3-210ENST00000472880 FKBPLQ9UIM3 349 aa19.31■□□□□ 0.68
COL9A3-210ENST00000472880 AAR2Q9Y312 384 aaKnown RBP19.31■□□□□ 0.68
COL9A3-210ENST00000472880 KCNMB2Q9Y691 235 aa19.31■□□□□ 0.68
COL9A3-210ENST00000472880 UBA6A0AVT1 1052 aaPredicted RBP19.3■□□□□ 0.68
COL9A3-210ENST00000472880 CDC14CA4D256 554 aa19.3■□□□□ 0.68
COL9A3-210ENST00000472880 OR5K3A6NET4 321 aa19.3■□□□□ 0.68
COL9A3-210ENST00000472880 MGAT4DA6NG13 374 aa19.3■□□□□ 0.68
COL9A3-210ENST00000472880 SRP72O76094 671 aaKnown RBP19.3■□□□□ 0.68
COL9A3-210ENST00000472880 TIAF1O95411 115 aa19.3■□□□□ 0.68
COL9A3-210ENST00000472880 EBLN1P0CF75 366 aa19.3■□□□□ 0.68
COL9A3-210ENST00000472880 FOLR1P15328 257 aa19.3■□□□□ 0.68
COL9A3-210ENST00000472880 PSMB4P28070 264 aa19.3■□□□□ 0.68
COL9A3-210ENST00000472880 CTNNA1P35221 906 aaKnown RBP19.3■□□□□ 0.68
COL9A3-210ENST00000472880 OTUD4Q01804 1114 aaKnown RBP19.3■□□□□ 0.68
COL9A3-210ENST00000472880 ARMC6Q6NXE6 501 aa19.3■□□□□ 0.68
COL9A3-210ENST00000472880 DUS1LQ6P1R4 473 aaKnown RBP19.3■□□□□ 0.68
COL9A3-210ENST00000472880 BPHLQ86WA6 291 aaPredicted RBP19.3■□□□□ 0.68
COL9A3-210ENST00000472880 ACTL9Q8TC94 416 aa19.3■□□□□ 0.68
COL9A3-210ENST00000472880 CT55Q8WUE5 264 aa19.3■□□□□ 0.68
COL9A3-210ENST00000472880 DCUN1D1Q96GG9 259 aa19.3■□□□□ 0.68
COL9A3-210ENST00000472880 FCRL4Q96PJ5 515 aa19.3■□□□□ 0.68
COL9A3-210ENST00000472880 INSM2Q96T92 566 aaPredicted RBP19.3■□□□□ 0.68
COL9A3-210ENST00000472880 APOL2Q9BQE5 337 aa19.3■□□□□ 0.68
COL9A3-210ENST00000472880 TWSG1Q9GZX9 223 aa19.3■□□□□ 0.68
COL9A3-210ENST00000472880 FGF21Q9NSA1 209 aa19.3■□□□□ 0.68
COL9A3-210ENST00000472880 HRASLS2Q9NWW9 162 aa19.3■□□□□ 0.68
COL9A3-210ENST00000472880 CRLS1Q9UJA2 301 aa19.3■□□□□ 0.68
COL9A3-210ENST00000472880 ACSL5Q9ULC5 683 aa19.3■□□□□ 0.68
COL9A3-210ENST00000472880 PCDHGA6Q9Y5G7 932 aa19.3■□□□□ 0.68
COL9A3-210ENST00000472880 UBR5O95071 2799 aaPredicted RBP19.3■□□□□ 0.68
COL9A3-210ENST00000472880 C5orf60A6NFR6 353 aa19.29■□□□□ 0.68
COL9A3-210ENST00000472880 C21orf140B9A014 251 aa19.29■□□□□ 0.68
COL9A3-210ENST00000472880 MKRN2OSH3BPM6 223 aa19.29■□□□□ 0.68
COL9A3-210ENST00000472880 PJA2O43164 708 aa19.29■□□□□ 0.68
COL9A3-210ENST00000472880 CRTAMO95727 393 aa19.29■□□□□ 0.68
COL9A3-210ENST00000472880 PYGMP11217 842 aa19.29■□□□□ 0.68
COL9A3-210ENST00000472880 RALBP11234 206 aa19.29■□□□□ 0.68
COL9A3-210ENST00000472880 EIF3EP60228 445 aaKnown RBP19.29■□□□□ 0.68
COL9A3-210ENST00000472880 HSD11B2P80365 405 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms