RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 DVL1P1P54792 670 aaPredicted RBP5.3□□□□□ -1.56
CCDC39-202ENST00000471307 ALG11Q2TAA5 492 aa5.3□□□□□ -1.56
CCDC39-202ENST00000471307 HIST2H2BCQ6DN03 193 aa5.3□□□□□ -1.56
CCDC39-202ENST00000471307 HIST2H2BDQ6DRA6 164 aa5.3□□□□□ -1.56
CCDC39-202ENST00000471307 FBXL22Q6P050 247 aa5.3□□□□□ -1.56
CCDC39-202ENST00000471307 ZNF852Q6ZMS4 543 aa5.3□□□□□ -1.56
CCDC39-202ENST00000471307 ZNF704Q6ZNC4 412 aaPredicted RBP5.3□□□□□ -1.56
CCDC39-202ENST00000471307 KCTD8Q6ZWB6 473 aa5.3□□□□□ -1.56
CCDC39-202ENST00000471307 HAPLN4Q86UW8 402 aa5.3□□□□□ -1.56
CCDC39-202ENST00000471307 RPAP2Q8IXW5 612 aaPredicted RBP5.3□□□□□ -1.56
CCDC39-202ENST00000471307 SMAP1Q8IYB5 467 aaPredicted RBP5.3□□□□□ -1.56
CCDC39-202ENST00000471307 BEST3Q8N1M1 668 aa5.3□□□□□ -1.56
CCDC39-202ENST00000471307 WDSUB1Q8N9V3 476 aa5.3□□□□□ -1.56
CCDC39-202ENST00000471307 CCDC191Q8NCU4 936 aa5.3□□□□□ -1.56
CCDC39-202ENST00000471307 MYRIPQ8NFW9 859 aa5.3□□□□□ -1.56
CCDC39-202ENST00000471307 UBE2Q2Q8WVN8 375 aa5.3□□□□□ -1.56
CCDC39-202ENST00000471307 SCRN2Q96FV2 425 aa5.3□□□□□ -1.56
CCDC39-202ENST00000471307 WBP1Q96G27 269 aa5.3□□□□□ -1.56
CCDC39-202ENST00000471307 USP44Q9H0E7 712 aa5.3□□□□□ -1.56
CCDC39-202ENST00000471307 C9orf78Q9NZ63 289 aaPredicted RBP5.3□□□□□ -1.56
CCDC39-202ENST00000471307 PNMA2Q9UL42 364 aa5.3□□□□□ -1.56
CCDC39-202ENST00000471307 RREB1Q92766 1687 aa5.3□□□□□ -1.56
CCDC39-202ENST00000471307 KDM3AQ9Y4C1 1321 aa5.29□□□□□ -1.56
CCDC39-202ENST00000471307 VCYO14598 125 aa5.29□□□□□ -1.56
CCDC39-202ENST00000471307 ZNHIT1O43257 154 aa5.29□□□□□ -1.56
CCDC39-202ENST00000471307 SEC31AO94979 1220 aaKnown RBP5.29□□□□□ -1.56
CCDC39-202ENST00000471307 UBTFL1P0CB47 393 aaPredicted RBP5.29□□□□□ -1.56
CCDC39-202ENST00000471307 ZNF23P17027 643 aa5.29□□□□□ -1.56
CCDC39-202ENST00000471307 ABCD3P28288 659 aa5.29□□□□□ -1.56
CCDC39-202ENST00000471307 RFC4P35249 363 aa5.29□□□□□ -1.56
CCDC39-202ENST00000471307 TAS2R38P59533 333 aa5.29□□□□□ -1.56
CCDC39-202ENST00000471307 GCKRQ14397 625 aa5.29□□□□□ -1.56
CCDC39-202ENST00000471307 COL28A1Q2UY09 1125 aa5.29□□□□□ -1.56
CCDC39-202ENST00000471307 MYLK3Q32MK0 819 aa5.29□□□□□ -1.56
CCDC39-202ENST00000471307 TMEM35AQ53FP2 167 aa5.29□□□□□ -1.56
CCDC39-202ENST00000471307 DCST1Q5T197 706 aa5.29□□□□□ -1.56
CCDC39-202ENST00000471307 SLC9C2Q5TAH2 1124 aa5.29□□□□□ -1.56
CCDC39-202ENST00000471307 DPPA4Q7L190 304 aa5.29□□□□□ -1.56
CCDC39-202ENST00000471307 ARMC8Q8IUR7 673 aa5.29□□□□□ -1.56
CCDC39-202ENST00000471307 TMEM255BQ8WV15 326 aa5.29□□□□□ -1.56
CCDC39-202ENST00000471307 GTF3C6Q969F1 213 aa5.29□□□□□ -1.56
CCDC39-202ENST00000471307 EVI5LQ96CN4 794 aa5.29□□□□□ -1.56
CCDC39-202ENST00000471307 ACOX2Q99424 681 aa5.29□□□□□ -1.56
CCDC39-202ENST00000471307 PCGF1Q9BSM1 259 aa5.29□□□□□ -1.56
CCDC39-202ENST00000471307 RWDD1Q9H446 243 aaPredicted RBP5.29□□□□□ -1.56
CCDC39-202ENST00000471307 ACSS1Q9NUB1 689 aaPredicted RBP5.29□□□□□ -1.56
CCDC39-202ENST00000471307 CWC25Q9NXE8 425 aaPredicted RBP5.29□□□□□ -1.56
CCDC39-202ENST00000471307 PDP2Q9P2J9 529 aa5.29□□□□□ -1.56
CCDC39-202ENST00000471307 NARFQ9UHQ1 456 aa5.29□□□□□ -1.56
CCDC39-202ENST00000471307 INTS6Q9UL03 887 aaKnown RBP5.29□□□□□ -1.56
CCDC39-202ENST00000471307 NUP98P52948 1817 aa5.29□□□□□ -1.56
CCDC39-202ENST00000471307 RGPD3A6NKT7 1758 aaPredicted RBP5.29□□□□□ -1.56
CCDC39-202ENST00000471307 RGPD4Q7Z3J3 1758 aa5.29□□□□□ -1.56
CCDC39-202ENST00000471307 CTAGE9A4FU28 777 aa5.28□□□□□ -1.56
CCDC39-202ENST00000471307 PCCAP05165 728 aaPredicted RBP5.28□□□□□ -1.56
CCDC39-202ENST00000471307 CTAGE8P0CG41 777 aa5.28□□□□□ -1.56
CCDC39-202ENST00000471307 FAM106CPP0CH98 169 aa5.28□□□□□ -1.56
CCDC39-202ENST00000471307 POLR2CP19387 275 aaPredicted RBP5.28□□□□□ -1.56
CCDC39-202ENST00000471307 PARP10Q53GL7 1025 aa5.28□□□□□ -1.56
CCDC39-202ENST00000471307 ZNF280DQ6N043 979 aa5.28□□□□□ -1.56
CCDC39-202ENST00000471307 GPR180Q86V85 440 aa5.28□□□□□ -1.56
CCDC39-202ENST00000471307 NRROSQ86YC3 692 aa5.28□□□□□ -1.56
CCDC39-202ENST00000471307 CTAGE4Q8IX94 777 aa5.28□□□□□ -1.56
CCDC39-202ENST00000471307 PSPC1Q8WXF1 523 aaKnown RBP5.28□□□□□ -1.56
CCDC39-202ENST00000471307 GRAMD2BQ96HH9 432 aa5.28□□□□□ -1.56
CCDC39-202ENST00000471307 TMEM68Q96MH6 324 aa5.28□□□□□ -1.56
CCDC39-202ENST00000471307 EIF2AK1Q9BQI3 630 aaKnown RBP5.28□□□□□ -1.56
CCDC39-202ENST00000471307 POLR3CQ9BUI4 534 aaPredicted RBP5.28□□□□□ -1.56
CCDC39-202ENST00000471307 C1QTNF5Q9BXJ0 243 aa5.28□□□□□ -1.56
CCDC39-202ENST00000471307 SLC25A18Q9H1K4 315 aa5.28□□□□□ -1.56
CCDC39-202ENST00000471307 SAGE1Q9NXZ1 904 aa5.28□□□□□ -1.56
CCDC39-202ENST00000471307 POLG2Q9UHN1 485 aa5.28□□□□□ -1.56
CCDC39-202ENST00000471307 FBXL2Q9UKC9 423 aa5.28□□□□□ -1.56
CCDC39-202ENST00000471307 N4BP2Q86UW6 1770 aaPredicted RBP5.28□□□□□ -1.56
CCDC39-202ENST00000471307 ARFGEF2Q9Y6D5 1785 aa5.28□□□□□ -1.56
CCDC39-202ENST00000471307 C4BP0C0L5 1744 aa5.28□□□□□ -1.56
CCDC39-202ENST00000471307 TNS1Q9HBL0 1735 aaKnown RBP5.28□□□□□ -1.56
CCDC39-202ENST00000471307 A0A1W2PRG0 241 aa5.27□□□□□ -1.57
CCDC39-202ENST00000471307 HMMRO75330 724 aa5.27□□□□□ -1.57
CCDC39-202ENST00000471307 AMBPP02760 352 aa5.27□□□□□ -1.57
CCDC39-202ENST00000471307 RNF224P0DH78 156 aa5.27□□□□□ -1.57
CCDC39-202ENST00000471307 ZNF182P17025 639 aaPredicted RBP5.27□□□□□ -1.57
CCDC39-202ENST00000471307 UBA1P22314 1058 aaKnown RBP5.27□□□□□ -1.57
CCDC39-202ENST00000471307 EPHA8P29322 1005 aaPredicted RBP5.27□□□□□ -1.57
CCDC39-202ENST00000471307 VEGFCP49767 419 aa5.27□□□□□ -1.57
CCDC39-202ENST00000471307 ISL1P61371 349 aa5.27□□□□□ -1.57
CCDC39-202ENST00000471307 TMEM95Q3KNT9 176 aa5.27□□□□□ -1.57
CCDC39-202ENST00000471307 NUP188Q5SRE5 1749 aa5.27□□□□□ -1.57
CCDC39-202ENST00000471307 STXBP5Q5T5C0 1151 aa5.27□□□□□ -1.57
CCDC39-202ENST00000471307 CDC73Q6P1J9 531 aa5.27□□□□□ -1.57
CCDC39-202ENST00000471307 CENPQQ7L2Z9 268 aaPredicted RBP5.27□□□□□ -1.57
CCDC39-202ENST00000471307 PPP1R42Q7Z4L9 355 aa5.27□□□□□ -1.57
CCDC39-202ENST00000471307 ESX1Q8N693 406 aa5.27□□□□□ -1.57
CCDC39-202ENST00000471307 CNBD1Q8NA66 436 aa5.27□□□□□ -1.57
CCDC39-202ENST00000471307 OR5R1Q8NH85 324 aa5.27□□□□□ -1.57
CCDC39-202ENST00000471307 UTP14AQ9BVJ6 771 aaKnown RBP5.27□□□□□ -1.57
CCDC39-202ENST00000471307 RBM4Q9BWF3 364 aaKnown RBP5.27□□□□□ -1.57
CCDC39-202ENST00000471307 KIF9Q9HAQ2 790 aa5.27□□□□□ -1.57
CCDC39-202ENST00000471307 SEBOXQ9HB31 216 aaPredicted RBP5.27□□□□□ -1.57
CCDC39-202ENST00000471307 TAS2R10Q9NYW0 307 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms