RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 MAPK15Q8TD08 544 aa11.73□□□□□ -0.53
VPS13D-204ENST00000469054 IFT81Q8WYA0 676 aa11.73□□□□□ -0.53
VPS13D-204ENST00000469054 LPGAT1Q92604 370 aa11.73□□□□□ -0.53
VPS13D-204ENST00000469054 CERS2Q96G23 380 aa11.73□□□□□ -0.53
VPS13D-204ENST00000469054 FAM167BQ9BTA0 163 aa11.73□□□□□ -0.53
VPS13D-204ENST00000469054 P2RY12Q9H244 342 aa11.73□□□□□ -0.53
VPS13D-204ENST00000469054 IARS2Q9NSE4 1012 aaKnown RBP11.73□□□□□ -0.53
VPS13D-204ENST00000469054 INTS10Q9NVR2 710 aaKnown RBP11.73□□□□□ -0.53
VPS13D-204ENST00000469054 GNPTGQ9UJJ9 305 aa11.73□□□□□ -0.53
VPS13D-204ENST00000469054 ACSL5Q9ULC5 683 aa11.73□□□□□ -0.53
VPS13D-204ENST00000469054 APOBEC2Q9Y235 224 aaKnown RBP11.73□□□□□ -0.53
VPS13D-204ENST00000469054 VPS9D1Q9Y2B5 631 aa11.73□□□□□ -0.53
VPS13D-204ENST00000469054 CFAP54Q96N23 3096 aa11.73□□□□□ -0.53
VPS13D-204ENST00000469054 ARID1BQ8NFD5 2236 aaPredicted RBP11.72□□□□□ -0.53
VPS13D-204ENST00000469054 TDRD6O60522 2096 aaKnown RBP11.72□□□□□ -0.53
VPS13D-204ENST00000469054 MYLKQ15746 1914 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 KIR2DS5A0A0G2JLQ3 304 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 A0A0G2JNG1 304 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 UBA6A0AVT1 1052 aaPredicted RBP11.72□□□□□ -0.53
VPS13D-204ENST00000469054 KIR2DS3K7RE56 304 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 NUDT21O43809 227 aaKnown RBP11.72□□□□□ -0.53
VPS13D-204ENST00000469054 FTH1P02794 183 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 GP1BAP07359 652 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 RHOXF2BP0C7M4 288 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 CDK4P11802 303 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 BRAFP15056 766 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 MAGEA4P43358 317 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 FASLGP48023 281 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 EIF3BP55884 814 aaKnown RBP11.72□□□□□ -0.53
VPS13D-204ENST00000469054 E2F1Q01094 437 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 BIRC2Q13490 618 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 KIR2DS5Q14953 304 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 CLCA4Q14CN2 919 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 ZNF658BQ4V348 819 aaPredicted RBP11.72□□□□□ -0.53
VPS13D-204ENST00000469054 CCDC157Q569K6 752 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 ZNF789Q5FWF6 425 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 AGAP9Q5VTM2 703 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 PTRHD1Q6GMV3 140 aaKnown RBP11.72□□□□□ -0.53
VPS13D-204ENST00000469054 TRMT10BQ6PF06 316 aaKnown RBP11.72□□□□□ -0.53
VPS13D-204ENST00000469054 XKR5Q6UX68 686 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 CCDC25Q86WR0 208 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 CNTN4Q8IWV2 1026 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 PALM2Q8IXS6 379 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 IFT20Q8IY31 132 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 C2CD4AQ8NCU7 369 aaPredicted RBP11.72□□□□□ -0.53
VPS13D-204ENST00000469054 SLC37A2Q8TED4 501 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 BIRC8Q96P09 236 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 RHOXF2Q9BQY4 288 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 TSSK1BQ9BXA7 367 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 COG4Q9H9E3 785 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 PPANQ9NQ55 473 aaKnown RBP11.72□□□□□ -0.53
VPS13D-204ENST00000469054 MOCS1Q9NZB8 636 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 SCHIP1Q9P0W5 487 aaPredicted RBP11.72□□□□□ -0.53
VPS13D-204ENST00000469054 LRIT1Q9P2V4 623 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 FAM8A1Q9UBU6 413 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 MTRF1LQ9UGC7 380 aaKnown RBP11.72□□□□□ -0.53
VPS13D-204ENST00000469054 METRNQ9UJH8 293 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 FBXO5Q9UKT4 447 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 WDR37Q9Y2I8 494 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 CRYL1Q9Y2S2 319 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 PCDHB1Q9Y5F3 818 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 RNF215Q9Y6U7 377 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 PCNX2A6NKB5 2137 aa11.72□□□□□ -0.53
VPS13D-204ENST00000469054 ZNF106Q9H2Y7 1883 aaKnown RBP11.72□□□□□ -0.53
VPS13D-204ENST00000469054 TP53BP1Q12888 1972 aaPredicted RBP11.71□□□□□ -0.53
VPS13D-204ENST00000469054 LRP4O75096 1905 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 RHPN2P1A8MT19 583 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 IQCF5A8MTL0 148 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 H3BMM5 538 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 LIN7AO14910 233 aaPredicted RBP11.71□□□□□ -0.53
VPS13D-204ENST00000469054 PPM1DO15297 605 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 TRIM16O95361 564 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 ESR1P03372 595 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 F7P08709 466 aaPredicted RBP11.71□□□□□ -0.53
VPS13D-204ENST00000469054 PNLIPP16233 465 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 XRCC1P18887 633 aaPredicted RBP11.71□□□□□ -0.53
VPS13D-204ENST00000469054 ECHS1P30084 290 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 FMO4P31512 558 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 HALP42357 657 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 SLC1A2P43004 574 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 CARSP49589 748 aaKnown RBP11.71□□□□□ -0.53
VPS13D-204ENST00000469054 MPP1Q00013 466 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 PLOD1Q02809 727 aaPredicted RBP11.71□□□□□ -0.53
VPS13D-204ENST00000469054 HHEXQ03014 270 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 RPA4Q13156 261 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 CUL1Q13616 776 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 CTSL3PQ5NE16 218 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 PERM1Q5SV97 790 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 TEDDM1Q5T9Z0 273 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 N4BP2L1Q5TBK1 243 aaPredicted RBP11.71□□□□□ -0.53
VPS13D-204ENST00000469054 ZNF449Q6P9G9 518 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 KIAA0408Q6ZU52 694 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 CEP128Q6ZU80 1094 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 C3orf62Q6ZUJ4 267 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 CYS1Q717R9 158 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 SLC9B2Q86UD5 537 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 LILRA3Q8N6C8 439 aaPredicted RBP11.71□□□□□ -0.53
VPS13D-204ENST00000469054 AVL9Q8NBF6 648 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 ADAMTS14Q8WXS8 1223 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 SLC39A7Q92504 469 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms