RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 CACNA2D3Q8IZS8 1091 aa11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 EFCAB3Q8N7B9 438 aa11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 Q8N9G6 341 aaPredicted RBP11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 DNAAF3Q8N9W5 541 aa11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 KIF18AQ8NI77 898 aa11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 AGAP2Q99490 1192 aa11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 C19orf43Q9BQ61 176 aa11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 ZSCAN5AQ9BUG6 496 aa11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 FRMD8Q9BZ67 464 aaPredicted RBP11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 BPIFA1Q9NP55 256 aa11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 PRDM8Q9NQV8 689 aa11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 PIH1D1Q9NWS0 290 aaKnown RBP11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 ASIC3Q9UHC3 531 aa11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 PCDHGA3Q9Y5H0 932 aa11.74□□□□□ -0.53
SQSTM1-206ENST00000466342 TCRBV7S3A2A0A539 114 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 EFCAB7A8K855 629 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 FADS2P1A8MWK0 482 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 AP3B1O00203 1094 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 STX7O15400 261 aaKnown RBP11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 LDB2O43679 373 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 BUD23O43709 281 aaKnown RBP11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 CLDN1O95832 211 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 FUCA1P04066 466 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 IVLP07476 585 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 CCL4P13236 92 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 SPAM1P38567 509 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 ZNF140P52738 457 aaPredicted RBP11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 C2orf54Q08AI8 447 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 ILF3Q12906 894 aaKnown RBP eCLIP11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 PEX6Q13608 980 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 TUBB2AQ13885 445 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 POU6F1Q14863 301 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 TCEA2Q15560 299 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 WHAMMP3Q1A5X7 153 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 KRTAP21-3Q3LHN1 58 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 C14orf28Q4W4Y0 310 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 HIVEP3Q5T1R4 2406 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 CERCAMQ5T4B2 595 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 C1QL3Q5VWW1 255 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 PDPK2PQ6A1A2 396 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 ZNF534Q76KX8 674 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 TMPRSS9Q7Z410 1059 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 TRAM1L1Q8N609 369 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 OR4K2Q8NGD2 314 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 DTX3LQ8TDB6 740 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 CPT1BQ92523 772 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 SCARF2Q96GP6 870 aaPredicted RBP11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 KRT12Q99456 494 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 TUBB2BQ9BVA1 445 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 GSDMCQ9BYG8 508 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 SEMA6CQ9H3T2 930 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 DPEP2Q9H4A9 486 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 CARS2Q9HA77 564 aaKnown RBP11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 SLC17A4Q9Y2C5 497 aa11.73□□□□□ -0.53
SQSTM1-206ENST00000466342 SETD2Q9BYW2 2564 aaPredicted RBP11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 HEATR9A2RTY3 570 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 TTI1O43156 1089 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 NUDT21O43809 227 aaKnown RBP11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 DUX1O43812 170 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 TMEM63AO94886 807 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 PRKAR1AP10644 381 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 FGF3P11487 239 aaPredicted RBP11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 ADCY8P40145 1251 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 TERF1P54274 439 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 SARNPP82979 210 aaKnown RBP11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 CDC20Q12834 499 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 LAMB3Q13751 1172 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 HLTFQ14527 1009 aaKnown RBP eCLIP11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 PTPRCAPQ14761 206 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 DEFB109BQ30KR1 87 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 ANKRD22Q5VYY1 191 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 TCTN3Q6NUS6 607 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 LRRC8BQ6P9F7 803 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 SPRED1Q7Z699 444 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 C17orf82Q86X59 251 aaPredicted RBP11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 NRROSQ86YC3 692 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 PPIL6Q8IXY8 311 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 NAT8LQ8N9F0 302 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 MCUQ8NE86 351 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 OR13C4Q8NGS5 318 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 CCL4L1Q8NHW4 92 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 STYXQ8WUJ0 223 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 COX14Q96I36 57 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 VPS35Q96QK1 796 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 RANBP9Q96S59 729 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 TRIM51Q9BSJ1 452 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 SPATA16Q9BXB7 569 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 IL26Q9NPH9 171 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 SPATS2LQ9NUQ6 558 aaKnown RBP11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 LRIT1Q9P2V4 623 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 SUFUQ9UMX1 484 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 KCTD3Q9Y597 815 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 MRFAP1Q9Y605 127 aa11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 TNRC6AQ8NDV7 1962 aaKnown RBP11.72□□□□□ -0.53
SQSTM1-206ENST00000466342 ZFHX3Q15911 3703 aa11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 PRRC2CQ9Y520 2896 aaKnown RBP11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 GLYATL1P3A0A0U1RQE8 302 aa11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 WIPF3A6NGB9 483 aa11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 MROH6A6NGR9 719 aa11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 TTLL8A6PVC2 850 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms