RNA–Protein interactions for RNA: ENST00000438801.1

HMGB1P18-201, Transcript of high mobility group box 1 pseudogene 18, humanhuman

BASIC

Gene HMGB1P18, Length 619 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P18-201ENST00000438801 SLC24A4Q8NFF2 622 aa2.8□□□□□ -1.96
HMGB1P18-201ENST00000438801 BBS10Q8TAM1 723 aa2.8□□□□□ -1.96
HMGB1P18-201ENST00000438801 RAB40AQ8WXH6 277 aa2.8□□□□□ -1.96
HMGB1P18-201ENST00000438801 CNOT9Q92600 299 aaKnown RBP2.8□□□□□ -1.96
HMGB1P18-201ENST00000438801 RND1Q92730 232 aa2.8□□□□□ -1.96
HMGB1P18-201ENST00000438801 CLSTN3Q9BQT9 956 aa2.8□□□□□ -1.96
HMGB1P18-201ENST00000438801 PHF7Q9BWX1 381 aaPredicted RBP2.8□□□□□ -1.96
HMGB1P18-201ENST00000438801 PLEKHA5Q9HAU0 1116 aa2.8□□□□□ -1.96
HMGB1P18-201ENST00000438801 PCDH9Q9HC56 1237 aa2.8□□□□□ -1.96
HMGB1P18-201ENST00000438801 SMYD2Q9NRG4 433 aa2.8□□□□□ -1.96
HMGB1P18-201ENST00000438801 CTNNA3Q9UI47 895 aa2.8□□□□□ -1.96
HMGB1P18-201ENST00000438801 GDAQ9Y2T3 454 aa2.8□□□□□ -1.96
HMGB1P18-201ENST00000438801 MXRA5Q9NR99 2828 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 ANKRD50Q9ULJ7 1429 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 RFX7Q2KHR2 1363 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 MN1Q10571 1320 aaPredicted RBP2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 IGKV3D-20A0A0C4DH25 116 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 PABPN1LA6NDY0 278 aaKnown RBP2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 SHISA7A6NL88 538 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 AKR1B15C9JRZ8 316 aaPredicted RBP2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 F5H423 210 aaPredicted RBP2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 ANP32CO43423 234 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 KLK8O60259 260 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 WEE2P0C1S8 567 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 SLC2A4P14672 509 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 ALDH4A1P30038 563 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 TMPOP42166 694 aaKnown RBP2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 HSD17B4P51659 736 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 KRTAP10-3P60369 221 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 SF3A2Q15428 464 aaKnown RBP2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 KCNT1Q5JUK3 1230 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 ARHGAP11AQ6P4F7 1023 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 C1orf228Q6PIY5 440 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 GFRALQ6UXV0 394 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 KMT5CQ86Y97 462 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 TMEM57Q8N5G2 664 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 SCCPDHQ8NBX0 429 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 FAM76AQ8TAV0 307 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 MAGEC3Q8TD91 643 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 SLC20A1Q8WUM9 679 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 AFG1LQ8WV93 481 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 POF1BQ8WVV4 589 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 MRPL38Q96DV4 380 aaKnown RBP2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 ALG14Q96F25 216 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 F2RL3Q96RI0 385 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 PARK7Q99497 189 aaKnown RBP2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 CNGB3Q9NQW8 809 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 MCM9Q9NXL9 1143 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 KIF17Q9P2E2 1029 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 TINAGQ9UJW2 476 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 DNAJC16Q9Y2G8 782 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 COL11A1P12107 1806 aaPredicted RBP2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 RGPD2P0DJD1 1756 aa2.79□□□□□ -1.96
HMGB1P18-201ENST00000438801 GREB1Q4ZG55 1949 aa2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 PMS2P5A8MQ11 134 aa2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 PER2O15055 1255 aa2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 PLIN1O60240 522 aa2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 TBX10O75333 385 aa2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 KRT5P13647 590 aa2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 CEACAM1P13688 526 aa2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 RXRAP19793 462 aa2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 RDXP35241 583 aaKnown RBP2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 USP8P40818 1118 aa2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 SEC61BP60468 96 aaKnown RBP2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 ACTR2P61160 394 aa2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 TDGQ13569 410 aa2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 CTF1Q16619 201 aa2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 ZNF528Q3MIS6 628 aa2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 MMEL1Q495T6 779 aa2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 PDLIM3Q53GG5 364 aaPredicted RBP2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 NBPF5PQ86XG9 351 aaPredicted RBP2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 APOBEC3FQ8IUX4 373 aaKnown RBP2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 FOXRED2Q8IWF2 684 aa2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 WDR63Q8IWG1 891 aa2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 CHERPQ8IWX8 916 aaKnown RBP2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 CHCHD4Q8N4Q1 142 aa2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 AGBL3Q8NEM8 1001 aa2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 ABTB1Q969K4 478 aaPredicted RBP2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 MED8Q96G25 268 aa2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 TWNKQ96RR1 684 aa2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 LITAFQ99732 161 aa2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 MXRA8Q9BRK3 442 aa2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 HAUS8Q9BT25 410 aa2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 CDK19Q9BWU1 502 aa2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 MOV10L1Q9BXT6 1211 aaKnown RBP2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 STN1Q9H668 368 aaKnown RBP2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 DBNDD1Q9H9R9 158 aa2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 PLCB1Q9NQ66 1216 aa2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 TMEM30AQ9NV96 361 aa2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 RRP7AQ9Y3A4 280 aaKnown RBP2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 A0A1B0GUL6 1792 aa2.78□□□□□ -1.96
HMGB1P18-201ENST00000438801 CDK5RAP2Q96SN8 1893 aa2.77□□□□□ -1.97
HMGB1P18-201ENST00000438801 VPS37CA5D8V6 355 aaPredicted RBP2.77□□□□□ -1.97
HMGB1P18-201ENST00000438801 FAM90A7PA6NKC0 464 aa2.77□□□□□ -1.97
HMGB1P18-201ENST00000438801 SH2D7A6NKC9 451 aaPredicted RBP2.77□□□□□ -1.97
HMGB1P18-201ENST00000438801 FAM90A22PA8MWA6 464 aa2.77□□□□□ -1.97
HMGB1P18-201ENST00000438801 FAM90A12PA8MX19 464 aa2.77□□□□□ -1.97
HMGB1P18-201ENST00000438801 FAM90A23PA8MXZ1 464 aa2.77□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms