RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 FRG1Q14331 258 aaKnown RBP12□□□□□ -0.49
PTPRF-208ENST00000437607 INPP5AQ14642 412 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 NFATC4Q14934 902 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 EFTUD2Q15029 972 aaKnown RBP eCLIP12□□□□□ -0.497e-6■■■□□ 16.7
PTPRF-208ENST00000437607 AGERQ15109 404 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 ELOCQ15369 112 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 ALS2CLQ60I27 953 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 ZNF449Q6P9G9 518 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 ENPP7Q6UWV6 458 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 LRIG3Q6UXM1 1119 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 RAB11FIP2Q7L804 512 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 RD3Q7Z3Z2 195 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 TSPAN33Q86UF1 283 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 CTAGE3PQ8IX95 158 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 FBXO39Q8N4B4 442 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 PLA2G15Q8NCC3 412 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 OR4K2Q8NGD2 314 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 OR13C4Q8NGS5 318 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 CALML6Q8TD86 181 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 TBRG4Q969Z0 631 aaKnown RBP eCLIP12□□□□□ -0.49
PTPRF-208ENST00000437607 PDXPQ96GD0 296 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 SMIM14Q96QK8 99 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 GFM1Q96RP9 751 aaKnown RBP12□□□□□ -0.49
PTPRF-208ENST00000437607 CYTH2Q99418 400 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 C1QTNF7Q9BXJ2 289 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 PPCSQ9HAB8 311 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 NLE1Q9NVX2 485 aaPredicted RBP12□□□□□ -0.49
PTPRF-208ENST00000437607 NSMCE4AQ9NXX6 385 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 PKD2L2Q9NZM6 624 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 TXNDC16Q9P2K2 825 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 SLC2A6Q9UGQ3 507 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 ACSL6Q9UKU0 697 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 OR1A2Q9Y585 309 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 IKBKGQ9Y6K9 419 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 FAM169AQ9Y6X4 670 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 RELNP78509 3460 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 SMIM23A6NLE4 172 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 AURKAO14965 403 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 SLC28A2O43868 658 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 RASGRP1O95267 797 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 VAPBO95292 243 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 CLDN7O95471 211 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 SHBGP04278 402 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 RPLP0P05388 317 aaKnown RBP11.99□□□□□ -0.49
PTPRF-208ENST00000437607 CTSEP14091 401 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 LHCGRP22888 699 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 CCKBRP32239 447 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 HMGCLP35914 325 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 SPAM1P38567 509 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 BLKP51451 505 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 INHBCP55103 352 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 SRP54P61011 504 aaKnown RBP11.99□□□□□ -0.49
PTPRF-208ENST00000437607 ACVR1Q04771 509 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 CNGA3Q16281 694 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 KRT71Q3SY84 523 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 KBTBD12Q3ZCT8 623 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 ZDHHC20Q5W0Z9 365 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 TRMT10BQ6PF06 316 aaKnown RBP11.99□□□□□ -0.49
PTPRF-208ENST00000437607 TAOK1Q7L7X3 1001 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 TMPRSS9Q7Z410 1059 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 CROCCP2Q86T23 111 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 GOLGA6L1Q8N7Z2 621 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 GPR156Q8NFN8 814 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 OR13J1Q8NGT2 312 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 OR6P1Q8NGX9 317 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 ZNF778Q96MU6 729 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 ZIM3Q96PE6 472 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 FUT8Q9BYC5 575 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 LRRN3Q9H3W5 708 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 CLMPQ9H6B4 373 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 PLAC1Q9HBJ0 212 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 RAD18Q9NS91 495 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 GPR34Q9UPC5 381 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 DOLKQ9UPQ8 538 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 KCTD3Q9Y597 815 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 ZNF106Q9H2Y7 1883 aaKnown RBP11.99□□□□□ -0.49
PTPRF-208ENST00000437607 UTP20O75691 2785 aaKnown RBP11.99□□□□□ -0.49
PTPRF-208ENST00000437607 NBPF19A0A087WUL8 3843 aa11.99□□□□□ -0.49
PTPRF-208ENST00000437607 TMEM202A6NGA9 273 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 FAM159BA6NKW6 160 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 A8MX80 341 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 POC1B-GALNT4F8VUJ3 575 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 PSMD11O00231 422 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 CCL22O00626 93 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 ATP8B1O43520 1251 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 WISP1O95388 367 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 INHBAP08476 426 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 GM2AP17900 193 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 ITIH1P19827 911 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 ITGALP20701 1170 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 ETV5P41161 510 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 LIG3P49916 1009 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 STC1P52823 247 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 ZFP36L1Q07352 338 aaKnown RBP11.98□□□□□ -0.49
PTPRF-208ENST00000437607 RALGDSQ12967 914 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 GPS2Q13227 327 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 EIF3IQ13347 325 aaKnown RBP11.98□□□□□ -0.49
PTPRF-208ENST00000437607 PTPRRQ15256 657 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 AARS2Q5JTZ9 985 aaKnown RBP11.98□□□□□ -0.49
PTPRF-208ENST00000437607 CEP85LQ5SZL2 805 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms