RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 NAT8LQ8N9F0 302 aa12.76□□□□□ -0.37
PTCH1-207ENST00000429896 FIG4Q92562 907 aa12.76□□□□□ -0.37
PTCH1-207ENST00000429896 NSL1Q96IY1 281 aa12.76□□□□□ -0.37
PTCH1-207ENST00000429896 BBS4Q96RK4 519 aa12.76□□□□□ -0.37
PTCH1-207ENST00000429896 SEPHS2Q99611 448 aa12.76□□□□□ -0.37
PTCH1-207ENST00000429896 SGK2Q9HBY8 427 aa12.76□□□□□ -0.37
PTCH1-207ENST00000429896 MAGEE1Q9HCI5 957 aa12.76□□□□□ -0.37
PTCH1-207ENST00000429896 DNAJC11Q9NVH1 559 aa12.76□□□□□ -0.37
PTCH1-207ENST00000429896 NUDT4Q9NZJ9 180 aa12.76□□□□□ -0.37
PTCH1-207ENST00000429896 PIPSLA2A3N6 862 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 COL6A2P12110 1019 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 CCR4P51679 360 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 STX5Q13190 355 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 QPCTQ16769 361 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 STARD8Q92502 1023 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 AIF1LQ9BQI0 150 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 CD248Q9HCU0 757 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 TMEM98Q9Y2Y6 226 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 ACTL7BQ9Y614 415 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 COPG1Q9Y678 874 aaKnown RBP12.75□□□□□ -0.37
PTCH1-207ENST00000429896 HHLA1C9JL84 531 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 KMOO15229 486 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 SEMA4FO95754 770 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 ZCCHC18P0CG32 403 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 GTF2E2P29084 291 aaKnown RBP12.75□□□□□ -0.37
PTCH1-207ENST00000429896 RRM2P31350 389 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 TNFRSF4P43489 277 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 CSTF1Q05048 431 aaKnown RBP12.75□□□□□ -0.37
PTCH1-207ENST00000429896 FASTKD3Q14CZ7 662 aaKnown RBP12.75□□□□□ -0.37
PTCH1-207ENST00000429896 CYP2U1Q7Z449 544 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 KLHL1Q9NR64 748 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 OR51F1A6NGY5 319 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 MTX2O75431 263 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 ECI2O75521 394 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 SCTRP47872 440 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 SPIDRQ14159 915 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 AKIRIN2Q53H80 203 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 SLC30A9Q6PML9 568 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 ZCCHC23Q6ZST2 131 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 GPRIN3Q6ZVF9 776 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 PAGE2Q7Z2X7 111 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 NRSN1Q8IZ57 195 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 HHIPQ96QV1 700 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 RC3H2Q9HBD1 1191 aaKnown RBP12.75□□□□□ -0.37
PTCH1-207ENST00000429896 CCDC177Q9NQR7 707 aaPredicted RBP12.75□□□□□ -0.37
PTCH1-207ENST00000429896 SYT12Q8IV01 421 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 DENND6AQ8IWF6 608 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 UTP15Q8TED0 518 aaKnown RBP12.75□□□□□ -0.37
PTCH1-207ENST00000429896 TADA1Q96BN2 335 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 FAIM2Q9BWQ8 316 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 NUSAP1Q9BXS6 441 aaKnown RBP12.75□□□□□ -0.37
PTCH1-207ENST00000429896 ENTPD4Q9Y227 616 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 FAM25AB3EWG3 89 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 FAM25CB3EWG5 89 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 FAM25GB3EWG6 89 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 PTPN5P54829 565 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 DYNC1I2Q13409 638 aaKnown RBP12.75□□□□□ -0.37
PTCH1-207ENST00000429896 RCN1Q15293 331 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 PARM1Q6UWI2 310 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 FAM46DQ8NEK8 389 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 CCDC134Q9H6E4 229 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 NLE1Q9NVX2 485 aaPredicted RBP12.75□□□□□ -0.37
PTCH1-207ENST00000429896 SLC12A4Q9UP95 1085 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 SIT1Q9Y3P8 196 aa12.75□□□□□ -0.37
PTCH1-207ENST00000429896 NOS3P29474 1203 aa12.74□□□□□ -0.37
PTCH1-207ENST00000429896 GRIA1P42261 906 aa12.74□□□□□ -0.37
PTCH1-207ENST00000429896 RPL14P50914 215 aaKnown RBP12.74□□□□□ -0.37
PTCH1-207ENST00000429896 COPAP53621 1224 aa12.74□□□□□ -0.37
PTCH1-207ENST00000429896 MRPS21P82921 87 aaKnown RBP12.74□□□□□ -0.37
PTCH1-207ENST00000429896 BTN2A1Q7KYR7 527 aa12.74□□□□□ -0.37
PTCH1-207ENST00000429896 HDDC2Q7Z4H3 204 aa12.74□□□□□ -0.37
PTCH1-207ENST00000429896 SPOCK2Q92563 424 aa12.74□□□□□ -0.37
PTCH1-207ENST00000429896 DLGAP2Q9P1A6 1054 aa12.74□□□□□ -0.37
PTCH1-207ENST00000429896 HGFP14210 728 aa12.74□□□□□ -0.37
PTCH1-207ENST00000429896 PSMA4P25789 261 aaKnown RBP12.74□□□□□ -0.37
PTCH1-207ENST00000429896 ETV3P41162 512 aa12.74□□□□□ -0.37
PTCH1-207ENST00000429896 ELOCQ15369 112 aa12.74□□□□□ -0.37
PTCH1-207ENST00000429896 NDUFA9Q16795 377 aa12.74□□□□□ -0.37
PTCH1-207ENST00000429896 AMZ1Q400G9 498 aa12.74□□□□□ -0.37
PTCH1-207ENST00000429896 DNAJC14Q6Y2X3 702 aaPredicted RBP12.74□□□□□ -0.37
PTCH1-207ENST00000429896 RNF44Q7L0R7 432 aa12.74□□□□□ -0.37
PTCH1-207ENST00000429896 EFCAB3Q8N7B9 438 aa12.74□□□□□ -0.37
PTCH1-207ENST00000429896 TTC29Q8NA56 475 aaPredicted RBP12.74□□□□□ -0.37
PTCH1-207ENST00000429896 RAD51AP1Q96B01 352 aa12.74□□□□□ -0.37
PTCH1-207ENST00000429896 IRAK3Q9Y616 596 aa12.74□□□□□ -0.37
PTCH1-207ENST00000429896 CHURC1-FNTBB4DL54 471 aa12.74□□□□□ -0.37
PTCH1-207ENST00000429896 TNFRSF10BO14763 440 aa12.74□□□□□ -0.37
PTCH1-207ENST00000429896 FFAR3O14843 346 aa12.74□□□□□ -0.37
PTCH1-207ENST00000429896 GPR42O15529 346 aa12.74□□□□□ -0.37
PTCH1-207ENST00000429896 FAM155BO75949 473 aa12.74□□□□□ -0.37
PTCH1-207ENST00000429896 CCND1P24385 295 aa12.74□□□□□ -0.37
PTCH1-207ENST00000429896 A0A0J9YYE9 177 aa12.74□□□□□ -0.37
PTCH1-207ENST00000429896 ULK1O75385 1050 aa12.74□□□□□ -0.37
PTCH1-207ENST00000429896 PAK4O96013 591 aaPredicted RBP12.74□□□□□ -0.37
PTCH1-207ENST00000429896 TRBC1P01850 177 aa12.74□□□□□ -0.37
PTCH1-207ENST00000429896 HNF4AP41235 474 aa12.74□□□□□ -0.37
PTCH1-207ENST00000429896 HDHD2Q9H0R4 259 aa12.74□□□□□ -0.37
PTCH1-207ENST00000429896 CIDEBQ9UHD4 219 aa12.74□□□□□ -0.37
PTCH1-207ENST00000429896 TCRBV7S3A2A0A539 114 aa12.74□□□□□ -0.37
PTCH1-207ENST00000429896 SAC3D1A6NKF1 404 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms