RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 CASQ2O14958 399 aaPredicted RBP13.19□□□□□ -0.3
VPS54-203ENST00000409558 IDO1P14902 403 aa13.19□□□□□ -0.3
VPS54-203ENST00000409558 MRPL58Q14197 206 aaKnown RBP13.19□□□□□ -0.3
VPS54-203ENST00000409558 Q6ZSR9 355 aa13.19□□□□□ -0.3
VPS54-203ENST00000409558 FAM86B1Q8N7N1 296 aa13.19□□□□□ -0.3
VPS54-203ENST00000409558 IGSF21Q96ID5 467 aa13.19□□□□□ -0.3
VPS54-203ENST00000409558 TRAPPC9Q96Q05 1148 aa13.19□□□□□ -0.3
VPS54-203ENST00000409558 DERL2Q9GZP9 239 aa13.19□□□□□ -0.3
VPS54-203ENST00000409558 E2F6O75461 281 aa13.19□□□□□ -0.3
VPS54-203ENST00000409558 C1QCP02747 245 aa13.19□□□□□ -0.3
VPS54-203ENST00000409558 URODP06132 367 aa13.19□□□□□ -0.3
VPS54-203ENST00000409558 OGNP20774 298 aaKnown RBP13.19□□□□□ -0.3
VPS54-203ENST00000409558 SLC7A1P30825 629 aa13.19□□□□□ -0.3
VPS54-203ENST00000409558 ROR2Q01974 943 aaKnown RBP13.19□□□□□ -0.3
VPS54-203ENST00000409558 PYCR3Q53H96 274 aa13.19□□□□□ -0.3
VPS54-203ENST00000409558 KANK2Q63ZY3 851 aa13.19□□□□□ -0.3
VPS54-203ENST00000409558 ANKRD26P1Q6NSI1 321 aa13.19□□□□□ -0.3
VPS54-203ENST00000409558 BTBD9Q96Q07 612 aa13.19□□□□□ -0.3
VPS54-203ENST00000409558 ILVBLA1L0T0 632 aa13.19□□□□□ -0.3
VPS54-203ENST00000409558 PABPN1LA6NDY0 278 aaKnown RBP13.19□□□□□ -0.3
VPS54-203ENST00000409558 LOC730098B7Z3J9 87 aa13.19□□□□□ -0.3
VPS54-203ENST00000409558 GLUD1P00367 558 aa13.19□□□□□ -0.3
VPS54-203ENST00000409558 MAP7Q14244 749 aa13.19□□□□□ -0.3
VPS54-203ENST00000409558 TRIM60Q495X7 471 aa13.19□□□□□ -0.3
VPS54-203ENST00000409558 CMPK2Q5EBM0 449 aa13.19□□□□□ -0.3
VPS54-203ENST00000409558 SPANXN4Q5MJ08 99 aa13.19□□□□□ -0.3
VPS54-203ENST00000409558 RPF2Q9H7B2 306 aaKnown RBP13.19□□□□□ -0.3
VPS54-203ENST00000409558 IL26Q9NPH9 171 aa13.19□□□□□ -0.3
VPS54-203ENST00000409558 ZNF490Q9ULM2 529 aaPredicted RBP13.19□□□□□ -0.3
VPS54-203ENST00000409558 NEDD8-MDP1E9PL57 170 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 HNRNPRO43390 633 aaKnown RBP13.18□□□□□ -0.3
VPS54-203ENST00000409558 ZBTB11O95625 1053 aaPredicted RBP13.18□□□□□ -0.3
VPS54-203ENST00000409558 IGLV3-27P01718 113 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 RING1Q06587 406 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 ELAVL2Q12926 359 aaKnown RBP13.18□□□□□ -0.3
VPS54-203ENST00000409558 CYP20A1Q6UW02 462 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 Q6ZVU0 165 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 LPCAT2Q7L5N7 544 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 FIBCD1Q8N539 461 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 CATSPER1Q8NEC5 780 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 CYB5D2Q8WUJ1 264 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 OPTCQ9UBM4 332 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 ASPDHA6ND91 283 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 HSPA1AP0DMV8 641 aaKnown RBP13.18□□□□□ -0.3
VPS54-203ENST00000409558 HSPA1BP0DMV9 641 aaKnown RBP13.18□□□□□ -0.3
VPS54-203ENST00000409558 MYCLP1P12525 358 aaPredicted RBP13.18□□□□□ -0.3
VPS54-203ENST00000409558 ZNF7P17097 686 aaPredicted RBP13.18□□□□□ -0.3
VPS54-203ENST00000409558 PRKG2Q13237 762 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 TMED1Q13445 227 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 CRY1Q16526 586 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 FAM180BQ6P0A1 224 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 BLOC1S3Q6QNY0 202 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 SERPINA13PQ6UXR4 307 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 ZNF296Q8WUU4 475 aaPredicted RBP13.18□□□□□ -0.3
VPS54-203ENST00000409558 NSMCE2Q96MF7 247 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 YME1L1Q96TA2 773 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 SH3GL3Q99963 347 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 CHID1Q9BWS9 393 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 ING2Q9H160 280 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 VCX3AQ9NNX9 186 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 RIC8BQ9NVN3 520 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 CCL26Q9Y258 94 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 E2F3O00716 465 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 TSPAN12O95859 305 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 UROSP10746 265 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 CYP4B1P13584 511 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 ITGALP20701 1170 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 AQP1P29972 269 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 KPNA1P52294 538 aaPredicted RBP13.18□□□□□ -0.3
VPS54-203ENST00000409558 NOGQ13253 232 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 LIX1Q8N485 282 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 PROKR1Q8TCW9 393 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 SNRNP27Q8WVK2 155 aaKnown RBP13.18□□□□□ -0.3
VPS54-203ENST00000409558 ING5Q8WYH8 240 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 EGLN2Q96KS0 407 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 TCF12Q99081 682 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 SMURF2Q9HAU4 748 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 ZDHHC7Q9NXF8 308 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 GPR45Q9Y5Y3 372 aa13.18□□□□□ -0.3
VPS54-203ENST00000409558 PTGES3LE9PB15 166 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 EPHB3P54753 998 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 ATP6V0D1P61421 351 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 ABRQ12979 859 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 LRRC23Q53EV4 343 aaPredicted RBP13.17□□□□□ -0.3
VPS54-203ENST00000409558 FAM26DQ5JW98 314 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 TBPL2Q6SJ96 375 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 ZSWIM9Q86XI8 627 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 MED8Q96G25 268 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 ELOVL2Q9NXB9 296 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 MYRFQ9Y2G1 1151 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 ATG2BQ96BY7 2078 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 GLYATL1P3A0A0U1RQE8 302 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 NPIPB15A6NHN6 443 aaPredicted RBP13.17□□□□□ -0.3
VPS54-203ENST00000409558 MYO1GB0I1T2 1018 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 RFPL2O75678 378 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 ABCB1P08183 1280 aaPredicted RBP13.17□□□□□ -0.3
VPS54-203ENST00000409558 CHRM1P11229 460 aaPredicted RBP13.17□□□□□ -0.3
VPS54-203ENST00000409558 ADSLP30566 484 aaPredicted RBP13.17□□□□□ -0.3
VPS54-203ENST00000409558 INHBCP55103 352 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 GTF2H3Q13889 308 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms