RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 RAPH1Q70E73 1250 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 ALYREFQ86V81 257 aaKnown RBP13.24□□□□□ -0.29
LIMS1-204ENST00000409441 LMNTD2Q8IXW0 634 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 TMEM145Q8NBT3 493 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 OR4L1Q8NH43 312 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 C1orf216Q8TAB5 229 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 SORT1Q99523 831 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 BTBD10Q9BSF8 475 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 NMUR2Q9GZQ4 415 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 ASB8Q9H765 288 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 SLC30A1Q9Y6M5 507 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 A0A087X1B8 175 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 FAM95CA0A1B0GW59 222 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 OR51F1A6NGY5 319 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 FADS2P1A8MWK0 482 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 CAPN14A8MX76 684 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 H0Y8X5 98 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 GOLGA8TH3BQL2 631 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 PRAMEF1O95521 474 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 SOD1P00441 154 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 GOT2P00505 430 aaKnown RBP13.24□□□□□ -0.29
LIMS1-204ENST00000409441 PYGLP06737 847 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 KITP10721 976 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 GABRB3P28472 473 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 IGFALSP35858 605 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 TRIM23P36406 574 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 IRF9Q00978 393 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 POU4F1Q01851 419 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 ASPHQ12797 758 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 ITGA9Q13797 1035 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 LPAL2Q16609 132 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 ATP13A5Q4VNC0 1218 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 SWT1Q5T5J6 900 aaKnown RBP13.24□□□□□ -0.29
LIMS1-204ENST00000409441 NEPROQ6NW34 567 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 PTAR1Q7Z6K3 402 aaPredicted RBP13.24□□□□□ -0.29
LIMS1-204ENST00000409441 SLC6A18Q96N87 628 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 RILPQ96NA2 401 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 MMADHCQ9H3L0 296 aaPredicted RBP13.24□□□□□ -0.29
LIMS1-204ENST00000409441 AASDHPPTQ9NRN7 309 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 ZNF358Q9NW07 568 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 MARCOQ9UEW3 520 aaPredicted RBP13.24□□□□□ -0.29
LIMS1-204ENST00000409441 FBXO5Q9UKT4 447 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 CNOT6Q9ULM6 557 aaKnown RBP13.24□□□□□ -0.29
LIMS1-204ENST00000409441 APOBEC2Q9Y235 224 aaKnown RBP13.24□□□□□ -0.29
LIMS1-204ENST00000409441 ACOT9Q9Y305 439 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 OR1A2Q9Y585 309 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 PLXND1Q9Y4D7 1925 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 GPR39O43194 453 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 LYPLA1O75608 230 aaPredicted RBP13.23□□□□□ -0.29
LIMS1-204ENST00000409441 KLHL2O95198 593 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 SLC35E2BP0CK96 405 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 STMN1P16949 149 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 ITGALP20701 1170 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 SLC1A2P43004 574 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 ABCG1P45844 678 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 CDKN1CP49918 316 aaPredicted RBP13.23□□□□□ -0.29
LIMS1-204ENST00000409441 RACK1P63244 317 aaKnown RBP13.23□□□□□ -0.29
LIMS1-204ENST00000409441 MPP1Q00013 466 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 CACNG1Q06432 222 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 NFATC2Q13469 925 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 GPR33Q49SQ1 333 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 ZRANB3Q5FWF4 1079 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 LIPMQ5VYY2 423 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 ICE2Q659A1 982 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 AFTPHQ6ULP2 937 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 ADAMTSL4Q6UY14 1074 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 GCNT7Q6ZNI0 430 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 Q6ZSR6 202 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 TAS2R42Q7RTR8 314 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 SNX20Q7Z614 316 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 ARHGAP24Q8N264 748 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 ACVR1CQ8NER5 493 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 BTN2A2Q8WVV5 523 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 STON2Q8WXE9 905 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 ATOH1Q92858 354 aaPredicted RBP13.23□□□□□ -0.29
LIMS1-204ENST00000409441 APOOQ9BUR5 198 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 CCDC106Q9BWC9 280 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 TEX101Q9BY14 249 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 IRF2BPLQ9H1B7 796 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 TM9SF3Q9HD45 589 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 TMEM74BQ9NUR3 256 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 OXSMQ9NWU1 459 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 TMPRSS11EQ9UL52 423 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 GON4LQ3T8J9 2241 aa13.23□□□□□ -0.29
LIMS1-204ENST00000409441 DOCK9Q9BZ29 2069 aa13.22□□□□□ -0.29
LIMS1-204ENST00000409441 SDK1Q7Z5N4 2213 aa13.22□□□□□ -0.29
LIMS1-204ENST00000409441 INPP4BO15327 924 aa13.22□□□□□ -0.29
LIMS1-204ENST00000409441 BCAT2O15382 392 aaPredicted RBP13.22□□□□□ -0.29
LIMS1-204ENST00000409441 CD3EAPO15446 510 aaKnown RBP13.22□□□□□ -0.29
LIMS1-204ENST00000409441 GYG2O15488 501 aa13.22□□□□□ -0.29
LIMS1-204ENST00000409441 SNUPNO95149 360 aaKnown RBP13.22□□□□□ -0.29
LIMS1-204ENST00000409441 SLC25A14O95258 325 aaPredicted RBP13.22□□□□□ -0.29
LIMS1-204ENST00000409441 PRSS56P0CW18 603 aa13.22□□□□□ -0.29
LIMS1-204ENST00000409441 TEAD1P28347 426 aa13.22□□□□□ -0.29
LIMS1-204ENST00000409441 CD38P28907 300 aa13.22□□□□□ -0.29
LIMS1-204ENST00000409441 CA5AP35218 305 aa13.22□□□□□ -0.29
LIMS1-204ENST00000409441 LEPRP48357 1165 aaKnown RBP13.22□□□□□ -0.29
LIMS1-204ENST00000409441 PFN3P60673 137 aa13.22□□□□□ -0.29
LIMS1-204ENST00000409441 CTBP1Q13363 440 aa13.22□□□□□ -0.29
LIMS1-204ENST00000409441 TUBB3Q13509 450 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms