RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 KBTBD12Q3ZCT8 623 aa28.82■■■□□ 2.2
USP42-202ENST00000404008 C6orf132Q5T0Z8 1188 aa28.82■■■□□ 2.2
USP42-202ENST00000404008 ZNF549Q6P9A3 640 aa28.82■■■□□ 2.2
USP42-202ENST00000404008 HM13Q8TCT9 377 aa28.82■■■□□ 2.2
USP42-202ENST00000404008 SETD7Q8WTS6 366 aaKnown RBP28.82■■■□□ 2.2
USP42-202ENST00000404008 TSSK1BQ9BXA7 367 aa28.82■■■□□ 2.2
USP42-202ENST00000404008 TBC1D29Q9UFV1 150 aa28.82■■■□□ 2.2
USP42-202ENST00000404008 PIEZO1Q92508 2521 aa28.81■■■□□ 2.2
USP42-202ENST00000404008 IQCF5A8MTL0 148 aa28.81■■■□□ 2.2
USP42-202ENST00000404008 H3BMM5 538 aa28.81■■■□□ 2.2
USP42-202ENST00000404008 SH3BP5O60239 455 aa28.81■■■□□ 2.2
USP42-202ENST00000404008 PKMP14618 531 aaKnown RBP28.81■■■□□ 2.2
USP42-202ENST00000404008 STRA8Q7Z7C7 330 aa28.81■■■□□ 2.2
USP42-202ENST00000404008 LKAAEAR1Q8TD35 194 aa28.81■■■□□ 2.2
USP42-202ENST00000404008 FAM8A1Q9UBU6 413 aa28.81■■■□□ 2.2
USP42-202ENST00000404008 RABGEF1Q9UJ41 708 aa28.81■■■□□ 2.2
USP42-202ENST00000404008 PTPRZ1P23471 2315 aaPredicted RBP28.8■■■□□ 2.2
USP42-202ENST00000404008 EML2O95834 649 aa28.8■■■□□ 2.2
USP42-202ENST00000404008 CD151P48509 253 aa28.8■■■□□ 2.2
USP42-202ENST00000404008 METRNLQ641Q3 311 aa28.8■■■□□ 2.2
USP42-202ENST00000404008 ZCCHC8Q6NZY4 707 aaKnown RBP28.8■■■□□ 2.2
USP42-202ENST00000404008 PIP4P1Q86T03 277 aa28.8■■■□□ 2.2
USP42-202ENST00000404008 CFAP206Q8IYR0 622 aa28.8■■■□□ 2.2
USP42-202ENST00000404008 KRT222Q8N1A0 295 aa28.8■■■□□ 2.2
USP42-202ENST00000404008 PANX3Q96QZ0 392 aa28.8■■■□□ 2.2
USP42-202ENST00000404008 DPEP2Q9H4A9 486 aa28.8■■■□□ 2.2
USP42-202ENST00000404008 RAB21Q9UL25 225 aa28.8■■■□□ 2.2
USP42-202ENST00000404008 COMMD10Q9Y6G5 202 aa28.8■■■□□ 2.2
USP42-202ENST00000404008 A6NCN8 305 aa28.79■■■□□ 2.2
USP42-202ENST00000404008 SIGLEC6O43699 453 aa28.79■■■□□ 2.2
USP42-202ENST00000404008 SNX2O60749 519 aa28.79■■■□□ 2.2
USP42-202ENST00000404008 NIPSNAP2O75323 286 aa28.79■■■□□ 2.2
USP42-202ENST00000404008 TRIM16O95361 564 aa28.79■■■□□ 2.2
USP42-202ENST00000404008 ITGB6P18564 788 aa28.79■■■□□ 2.2
USP42-202ENST00000404008 IDSP22304 550 aa28.79■■■□□ 2.2
USP42-202ENST00000404008 ABCG1P45844 678 aa28.79■■■□□ 2.2
USP42-202ENST00000404008 LILRA3Q8N6C8 439 aaPredicted RBP28.79■■■□□ 2.2
USP42-202ENST00000404008 RHBDD1Q8TEB9 315 aa28.79■■■□□ 2.2
USP42-202ENST00000404008 ELMO1Q92556 727 aa28.79■■■□□ 2.2
USP42-202ENST00000404008 MCMBPQ9BTE3 642 aa28.79■■■□□ 2.2
USP42-202ENST00000404008 CCDC68Q9H2F9 335 aa28.79■■■□□ 2.2
USP42-202ENST00000404008 ACSS3Q9H6R3 686 aa28.79■■■□□ 2.2
USP42-202ENST00000404008 COG4Q9H9E3 785 aa28.79■■■□□ 2.2
USP42-202ENST00000404008 PRDM8Q9NQV8 689 aa28.79■■■□□ 2.2
USP42-202ENST00000404008 PCOLCE2Q9UKZ9 415 aa28.79■■■□□ 2.2
USP42-202ENST00000404008 B4DGG1 531 aa28.78■■■□□ 2.2
USP42-202ENST00000404008 RIPK2O43353 540 aa28.78■■■□□ 2.2
USP42-202ENST00000404008 NAB1Q13506 487 aa28.78■■■□□ 2.2
USP42-202ENST00000404008 EFTUD2Q15029 972 aaKnown RBP eCLIP28.78■■■□□ 2.2
USP42-202ENST00000404008 OGFOD3Q6PK18 319 aa28.78■■■□□ 2.2
USP42-202ENST00000404008 SFTPA2Q8IWL1 248 aa28.78■■■□□ 2.2
USP42-202ENST00000404008 CTAGE3PQ8IX95 158 aa28.78■■■□□ 2.2
USP42-202ENST00000404008 FAM181AQ8N9Y4 354 aa28.78■■■□□ 2.2
USP42-202ENST00000404008 BAHD1Q8TBE0 780 aaPredicted RBP28.78■■■□□ 2.2
USP42-202ENST00000404008 AENQ8WTP8 325 aaKnown RBP28.78■■■□□ 2.2
USP42-202ENST00000404008 ZDHHC1Q8WTX9 485 aa28.78■■■□□ 2.2
USP42-202ENST00000404008 CAMK1GQ96NX5 476 aa28.78■■■□□ 2.2
USP42-202ENST00000404008 CYTH2Q99418 400 aa28.78■■■□□ 2.2
USP42-202ENST00000404008 AARSD1Q9BTE6 412 aaKnown RBP28.78■■■□□ 2.2
USP42-202ENST00000404008 ACSL5Q9ULC5 683 aa28.78■■■□□ 2.2
USP42-202ENST00000404008 CBFA2T3O75081 653 aa28.77■■■□□ 2.2
USP42-202ENST00000404008 TUBBP07437 444 aa28.77■■■□□ 2.2
USP42-202ENST00000404008 ABHD2P08910 425 aa28.77■■■□□ 2.2
USP42-202ENST00000404008 F3P13726 295 aa28.77■■■□□ 2.2
USP42-202ENST00000404008 RPL10P27635 214 aaKnown RBP28.77■■■□□ 2.2
USP42-202ENST00000404008 CCR7P32248 378 aa28.77■■■□□ 2.2
USP42-202ENST00000404008 SEPT7Q16181 437 aaKnown RBP28.77■■■□□ 2.2
USP42-202ENST00000404008 AGAP9Q5VTM2 703 aa28.77■■■□□ 2.2
USP42-202ENST00000404008 WASH2PQ6VEQ5 465 aa28.77■■■□□ 2.2
USP42-202ENST00000404008 PPM1NQ8N819 430 aa28.77■■■□□ 2.2
USP42-202ENST00000404008 CPNE1Q99829 537 aa28.77■■■□□ 2.2
USP42-202ENST00000404008 WASH6PQ9NQA3 447 aa28.77■■■□□ 2.2
USP42-202ENST00000404008 SIRPGQ9P1W8 387 aa28.77■■■□□ 2.2
USP42-202ENST00000404008 CORO1CQ9ULV4 474 aaPredicted RBP28.77■■■□□ 2.2
USP42-202ENST00000404008 MED16Q9Y2X0 877 aa28.77■■■□□ 2.2
USP42-202ENST00000404008 SLC30A4O14863 429 aa28.76■■■□□ 2.2
USP42-202ENST00000404008 TM4SF5O14894 197 aa28.76■■■□□ 2.2
USP42-202ENST00000404008 LIN7AO14910 233 aaPredicted RBP28.76■■■□□ 2.2
USP42-202ENST00000404008 NOBOXO60393 691 aa28.76■■■□□ 2.2
USP42-202ENST00000404008 AOAHP28039 575 aa28.76■■■□□ 2.2
USP42-202ENST00000404008 BOP1Q14137 746 aaKnown RBP28.76■■■□□ 2.2
USP42-202ENST00000404008 PROX2Q3B8N5 592 aa28.76■■■□□ 2.2
USP42-202ENST00000404008 ABRAXAS1Q6UWZ7 409 aa28.76■■■□□ 2.2
USP42-202ENST00000404008 NAPRTQ6XQN6 538 aa28.76■■■□□ 2.2
USP42-202ENST00000404008 ZC3HC1Q86WB0 502 aaKnown RBP28.76■■■□□ 2.2
USP42-202ENST00000404008 NAGSQ8N159 534 aa28.76■■■□□ 2.2
USP42-202ENST00000404008 ARL10Q8N8L6 244 aa28.76■■■□□ 2.2
USP42-202ENST00000404008 KYQ8NBH2 561 aa28.76■■■□□ 2.2
USP42-202ENST00000404008 GPR156Q8NFN8 814 aa28.76■■■□□ 2.2
USP42-202ENST00000404008 KCNJ9Q92806 393 aa28.76■■■□□ 2.2
USP42-202ENST00000404008 APOLD1Q96LR9 279 aa28.76■■■□□ 2.2
USP42-202ENST00000404008 NDNQ99608 321 aa28.76■■■□□ 2.2
USP42-202ENST00000404008 EPB41L4BQ9H329 900 aa28.76■■■□□ 2.2
USP42-202ENST00000404008 TXNDC16Q9P2K2 825 aa28.76■■■□□ 2.2
USP42-202ENST00000404008 CDV3Q9UKY7 258 aaKnown RBP28.76■■■□□ 2.2
USP42-202ENST00000404008 A0A087WUV0 522 aaPredicted RBP28.75■■■□□ 2.19
USP42-202ENST00000404008 PDZK1P1A8MUH7 402 aa28.75■■■□□ 2.19
USP42-202ENST00000404008 BRAFP15056 766 aa28.75■■■□□ 2.19
USP42-202ENST00000404008 CHRM3P20309 590 aa28.75■■■□□ 2.19
USP42-202ENST00000404008 RPA4Q13156 261 aa28.75■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms