RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 FPGTO14772 594 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 DFNA5O60443 496 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 SPAG6O75602 509 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 PRAMEF1O95521 474 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 PCCBP05166 539 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 FAM153BP0C7A2 387 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 GPR89BP0CG08 455 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 MYCLP1P12525 358 aaPredicted RBP9.07□□□□□ -0.96
VPS53-203ENST00000401468 CKMT2P17540 419 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 OGNP20774 298 aaKnown RBP9.07□□□□□ -0.96
VPS53-203ENST00000401468 MCM3P25205 808 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 MC4RP32245 332 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 CA5AP35218 305 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 MAGEA4P43358 317 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 RXRGP48443 463 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 ADARP55265 1226 aaKnown RBP9.07□□□□□ -0.96
VPS53-203ENST00000401468 GPX6P59796 221 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 CDK3Q00526 305 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 CACNG1Q06432 222 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 HLTFQ14527 1009 aaKnown RBP eCLIP9.07□□□□□ -0.96
VPS53-203ENST00000401468 INPP5AQ14642 412 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 SLMAPQ14BN4 828 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 CHRNA6Q15825 494 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 LONRF1Q17RB8 773 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 TYSND1Q2T9J0 566 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 FAM153CQ494X1 144 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 PERM1Q5SV97 790 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 CASC4Q6P4E1 433 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 GUSBP11Q6P575 273 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 FAM151BQ6UXP7 276 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 PACS1Q6VY07 963 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 CERS6Q6ZMG9 384 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 MACC1Q6ZN28 852 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 HEATR4Q86WZ0 1026 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 PIANPQ8IYJ0 282 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 ZBED8Q8IZ13 594 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 NXPE1Q8N323 547 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 GALNT15Q8N3T1 639 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.07□□□□□ -0.96
VPS53-203ENST00000401468 ZNF548Q8NEK5 533 aaPredicted RBP9.07□□□□□ -0.96
VPS53-203ENST00000401468 OR4L1Q8NH43 312 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 GSDMBQ8TAX9 411 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 AENQ8WTP8 325 aaKnown RBP9.07□□□□□ -0.96
VPS53-203ENST00000401468 PYROXD1Q8WU10 500 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 IFT81Q8WYA0 676 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 GLYATL1Q969I3 302 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 TSACCQ96A04 125 aaPredicted RBP9.07□□□□□ -0.96
VPS53-203ENST00000401468 HIC2Q96JB3 615 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 BBC3Q96PG8 261 aaPredicted RBP9.07□□□□□ -0.96
VPS53-203ENST00000401468 MCMBPQ9BTE3 642 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 APOOQ9BUR5 198 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 PARD6BQ9BYG5 372 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 ERVMER34-1Q9H9K5 563 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 SAYSD1Q9NPB0 183 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 VPS18Q9P253 973 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 CD84Q9UIB8 345 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 CHMP2BQ9UQN3 213 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 SLC17A4Q9Y2C5 497 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 OR1A2Q9Y585 309 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 SPTY2D1-AS1A0A0U1RR47 76 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 CCL22O00626 93 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 TNFRSF10CO14798 259 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 CHUKO15111 745 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 GPR39O43194 453 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 SGTAO43765 313 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 BRINP1O60477 761 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 VAPBO95292 243 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 GOT2P00505 430 aaKnown RBP9.06□□□□□ -0.96
VPS53-203ENST00000401468 SLC4A1P02730 911 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 PRB1P04280 392 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 MPOP05164 745 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 ABHD2P08910 425 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 ITGALP20701 1170 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 ACRV1P26436 265 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 GPR1P46091 355 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 SEMA3AQ14563 771 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 ITIH4Q14624 930 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 NFATC4Q14934 902 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 KHDC1Q4VXA5 237 aaKnown RBP9.06□□□□□ -0.96
VPS53-203ENST00000401468 PRRT3Q5FWE3 981 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 LDLRAP1Q5SW96 308 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 GPRC6AQ5T6X5 926 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 LYPLAL1Q5VWZ2 237 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 RAET1GQ6H3X3 334 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 CES3Q6UWW8 571 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 PDZD3Q86UT5 571 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 CILP2Q8IUL8 1156 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 HID1Q8IV36 788 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 ANKMY2Q8IV38 441 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 OR4C6Q8NH72 309 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 IFI44Q8TCB0 444 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 ZNF398Q8TD17 642 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 CAVIN3Q969G5 261 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 ZNF669Q96BR6 464 aaPredicted RBP9.06□□□□□ -0.96
VPS53-203ENST00000401468 ULK4Q96C45 1275 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 CERS2Q96G23 380 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 TTC25Q96NG3 672 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 TCF12Q99081 682 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 LGR4Q9BXB1 951 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 SPATA16Q9BXB7 569 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms