RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 ACAP2Q15057 778 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 BCL7AQ4VC05 210 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 CELF3Q5SZQ8 465 aaKnown RBP9.2□□□□□ -0.94
COL28A1-201ENST00000399429 RBM20Q5T481 1227 aaKnown RBP9.2□□□□□ -0.94
COL28A1-201ENST00000399429 NCBP2-AS2Q69YL0 99 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 LCN8Q6JVE9 175 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 SPATA19Q7Z5L4 167 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 TFAP2DQ7Z6R9 452 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 GPSM1Q86YR5 675 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 FAM110BQ8TC76 370 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 TXNDC15Q96J42 360 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 GLIS2Q9BZE0 524 aaPredicted RBP9.2□□□□□ -0.94
COL28A1-201ENST00000399429 RANGRFQ9HD47 186 aaPredicted RBP9.2□□□□□ -0.94
COL28A1-201ENST00000399429 TMPRSS4Q9NRS4 437 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 INTS7Q9NVH2 962 aaKnown RBP9.2□□□□□ -0.94
COL28A1-201ENST00000399429 MRPL39Q9NYK5 338 aaKnown RBP9.2□□□□□ -0.94
COL28A1-201ENST00000399429 COMMD3Q9UBI1 195 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 CYTH4Q9UIA0 394 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 MAPRE3Q9UPY8 281 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 CHD4Q14839 1912 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 SPATA31A6Q5VVP1 1343 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 A0A1W2PQ67 120 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 PLK4O00444 970 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 SEC14L2O76054 403 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 SLC35E2BP0CK96 405 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 SLC6A2P23975 617 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 ARRB2P32121 409 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 BAG6P46379 1132 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 RPL6Q02878 288 aaKnown RBP9.2□□□□□ -0.94
COL28A1-201ENST00000399429 NFE2Q16621 373 aaPredicted RBP9.2□□□□□ -0.94
COL28A1-201ENST00000399429 FAM187BQ17R55 369 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 TRIM71Q2Q1W2 868 aaKnown RBP9.2□□□□□ -0.94
COL28A1-201ENST00000399429 FAM209AQ5JX71 171 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 GRAMD2AQ8IUY3 354 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 OLIG1Q8TAK6 271 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 WNT8BQ93098 351 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 SLC38A4Q969I6 547 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 NECTIN4Q96NY8 510 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 SLC30A3Q99726 388 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 MYOCQ99972 504 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 AGAP5A6NIR3 686 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 ORC5O43913 435 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 PGRP06401 933 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 NPR3P17342 541 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 CAPN3P20807 821 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 ASPAP45381 313 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 OR3A3P47888 321 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 ITGA1P56199 1179 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 GRSF1Q12849 480 aaKnown RBP eCLIP9.2□□□□□ -0.94
COL28A1-201ENST00000399429 MAB21L1Q13394 359 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 TNFAIP1Q13829 316 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 RNASE12Q5GAN4 147 aaKnown RBP9.2□□□□□ -0.94
COL28A1-201ENST00000399429 OVOS1Q6IE37 1185 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 CASP12Q6UXS9 341 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 TICAM1Q8IUC6 712 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 HOXD1Q9GZZ0 328 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 EIF2B3Q9NR50 452 aaKnown RBP9.2□□□□□ -0.94
COL28A1-201ENST00000399429 FAM198AQ9UFP1 575 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 LTN1O94822 1766 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 BCL9O00512 1426 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 ACKR2O00590 384 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 PRMT5O14744 637 aaPredicted RBP9.19□□□□□ -0.94
COL28A1-201ENST00000399429 MITFO75030 526 aaPredicted RBP9.19□□□□□ -0.94
COL28A1-201ENST00000399429 DNAJB5O75953 348 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 DHFRP00374 187 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 HMBSP08397 361 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 IMPDH1P20839 514 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 RHAGQ02094 409 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 PUDPQ08623 228 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 STK11Q15831 433 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 LCLAT1Q6UWP7 414 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 PTCHD4Q6ZW05 846 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 NRARPQ7Z6K4 114 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 ACVR1CQ8NER5 493 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 VPS37AQ8NEZ2 397 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 MYLPFQ96A32 169 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 BARD1Q99728 777 aaKnown RBP9.19□□□□□ -0.94
COL28A1-201ENST00000399429 FDXACB1Q9BRP7 624 aaPredicted RBP9.19□□□□□ -0.94
COL28A1-201ENST00000399429 CATSPERZQ9NTU4 200 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 CLN6Q9NWW5 311 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 ZNF112Q9UJU3 913 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 TMCC3Q9ULS5 477 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 GSTK1Q9Y2Q3 226 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 KCNE2Q9Y6J6 123 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 GADD45AP24522 165 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 ERP29P30040 261 aaKnown RBP9.19□□□□□ -0.94
COL28A1-201ENST00000399429 POLR2IP36954 125 aaKnown RBP9.19□□□□□ -0.94
COL28A1-201ENST00000399429 MATKP42679 507 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 ATN1P54259 1190 aaPredicted RBP9.19□□□□□ -0.94
COL28A1-201ENST00000399429 LCP2Q13094 533 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 CAMK2BQ13554 666 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 RAPSNQ13702 412 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 CDK10Q15131 360 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 FAM174BQ3ZCQ3 159 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 PNCKQ6P2M8 343 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 LYSMD2Q8IV50 215 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 C1orf127Q8N9H9 656 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 SLC37A3Q8NCC5 494 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 LPCAT1Q8NF37 534 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 ZNF431Q8TF32 576 aaPredicted RBP9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms