RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 ZNF783Q6ZMS7 281 aa9.52□□□□□ -0.88
COL6A3-204ENST00000392003 GPRIN3Q6ZVF9 776 aa9.52□□□□□ -0.88
COL6A3-204ENST00000392003 FUNDC1Q8IVP5 155 aa9.52□□□□□ -0.88
COL6A3-204ENST00000392003 HJURPQ8NCD3 748 aaPredicted RBP9.52□□□□□ -0.88
COL6A3-204ENST00000392003 PSD4Q8NDX1 1056 aa9.52□□□□□ -0.88
COL6A3-204ENST00000392003 NAT14Q8WUY8 206 aa9.52□□□□□ -0.88
COL6A3-204ENST00000392003 GAB3Q8WWW8 586 aa9.52□□□□□ -0.88
COL6A3-204ENST00000392003 LRTOMTQ8WZ04 291 aa9.52□□□□□ -0.88
COL6A3-204ENST00000392003 KCNJ9Q92806 393 aa9.52□□□□□ -0.88
COL6A3-204ENST00000392003 CD300AQ9UGN4 299 aa9.52□□□□□ -0.88
COL6A3-204ENST00000392003 VPS51Q9UID3 782 aa9.52□□□□□ -0.88
COL6A3-204ENST00000392003 CNOT11Q9UKZ1 510 aaKnown RBP9.52□□□□□ -0.88
COL6A3-204ENST00000392003 SMIM31A0A1B0GVY4 71 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 CCDC160A6NGH7 325 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 KATNA1O75449 491 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 GMNNO75496 209 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 ESRRBO95718 433 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 CXCL10P02778 98 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 CYBBP04839 570 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 CKMP06732 381 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 PPP3CCP48454 512 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 CDKN1CP49918 316 aaPredicted RBP9.52□□□□□ -0.89
COL6A3-204ENST00000392003 SGSHP51688 502 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 TRAF2Q12933 501 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 C6orf52Q5T4I8 152 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 TPGS2Q68CL5 300 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 DNAJB7Q7Z6W7 309 aaPredicted RBP9.52□□□□□ -0.89
COL6A3-204ENST00000392003 PIANPQ8IYJ0 282 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 CPNE9Q8IYJ1 553 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 TMEM102Q8N9M5 508 aaPredicted RBP9.52□□□□□ -0.89
COL6A3-204ENST00000392003 TSPEARQ8WU66 669 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 EEF1AKMT1Q8WVE0 214 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 OSCP1Q8WVF1 389 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 CLSTN3Q9BQT9 956 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 CLPBQ9H078 707 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 POLMQ9NP87 494 aaPredicted RBP9.52□□□□□ -0.89
COL6A3-204ENST00000392003 AURKCQ9UQB9 309 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 PCDHB1Q9Y5F3 818 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 GPC6Q9Y625 555 aaPredicted RBP9.52□□□□□ -0.89
COL6A3-204ENST00000392003 GREB1Q4ZG55 1949 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 TCRBV3S1A0A5B6 114 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 PCP4L1A6NKN8 68 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 PRMT5O14744 637 aaPredicted RBP9.52□□□□□ -0.89
COL6A3-204ENST00000392003 SEC24AO95486 1093 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 PIM1P11309 404 aaPredicted RBP9.52□□□□□ -0.89
COL6A3-204ENST00000392003 CASP2P42575 452 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 RGS4P49798 205 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 CACNG1Q06432 222 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 NRF1Q16656 503 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 PITRM1Q5JRX3 1037 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 IYDQ6PHW0 289 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 NCEH1Q6PIU2 408 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 CERS6Q6ZMG9 384 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 CYHR1Q6ZMK1 362 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 AMIGO2Q86SJ2 522 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 ZUFSPQ96AP4 578 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 ZFRQ96KR1 1074 aaKnown RBP9.52□□□□□ -0.89
COL6A3-204ENST00000392003 SMIM14Q96QK8 99 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 SDR39U1Q9NRG7 319 aaPredicted RBP9.52□□□□□ -0.89
COL6A3-204ENST00000392003 NUDT4Q9NZJ9 180 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 APPL1Q9UKG1 709 aa9.52□□□□□ -0.89
COL6A3-204ENST00000392003 TNPO3Q9Y5L0 923 aaKnown RBP9.52□□□□□ -0.89
COL6A3-204ENST00000392003 A8MU76 341 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 H0YJX3 145 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 AP1G1O43747 822 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 OR1I1O60431 355 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 BAIAP3O94812 1187 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 LRG1P02750 347 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 HMGA1P17096 107 aaKnown RBP9.51□□□□□ -0.89
COL6A3-204ENST00000392003 ZNF7P17097 686 aaPredicted RBP9.51□□□□□ -0.89
COL6A3-204ENST00000392003 CD9P21926 228 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 PSMA4P25789 261 aaKnown RBP9.51□□□□□ -0.89
COL6A3-204ENST00000392003 RPL5P46777 297 aaKnown RBP9.51□□□□□ -0.89
COL6A3-204ENST00000392003 AGTR2P50052 363 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 DEFB103AP81534 67 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 ECT2LQ008S8 904 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 GRIK2Q13002 908 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 INO80DQ53TQ3 878 aaPredicted RBP9.51□□□□□ -0.89
COL6A3-204ENST00000392003 TBCELQ5QJ74 424 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 KRT80Q6KB66 452 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 OGFOD2Q6N063 350 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 ALKBH2Q6NS38 261 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 RETSATQ6NUM9 610 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 SCIMPQ6UWF3 145 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 ZBTB49Q6ZSB9 765 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 ITIH5Q86UX2 942 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 TICAM1Q8IUC6 712 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 AHI1Q8N157 1196 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 TMEM199Q8N511 208 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 MINDY1Q8N5J2 469 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 MRPS31Q92665 395 aaKnown RBP9.51□□□□□ -0.89
COL6A3-204ENST00000392003 BIRC8Q96P09 236 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 CYP2S1Q96SQ9 504 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 TMEM106CQ9BVX2 250 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 OSBPL11Q9BXB4 747 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 KLF16Q9BXK1 252 aaPredicted RBP9.51□□□□□ -0.89
COL6A3-204ENST00000392003 COQ10BQ9H8M1 238 aa9.51□□□□□ -0.89
COL6A3-204ENST00000392003 EIF2B4Q9UI10 523 aaKnown RBP9.51□□□□□ -0.89
COL6A3-204ENST00000392003 TSR3Q9UJK0 312 aaKnown RBP9.51□□□□□ -0.89
COL6A3-204ENST00000392003 ANGPTL3Q9Y5C1 460 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms