RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 PRMT2P55345 433 aa13.02□□□□□ -0.32
NPHP4-203ENST00000378169 HTRA3P83110 453 aa13.02□□□□□ -0.32
NPHP4-203ENST00000378169 ZNF33AQ06730 810 aa13.02□□□□□ -0.32
NPHP4-203ENST00000378169 SIM2Q14190 667 aaPredicted RBP13.02□□□□□ -0.32
NPHP4-203ENST00000378169 MAPK11Q15759 364 aa13.02□□□□□ -0.32
NPHP4-203ENST00000378169 ZNF296Q8WUU4 475 aaPredicted RBP13.02□□□□□ -0.32
NPHP4-203ENST00000378169 ARNTL2Q8WYA1 636 aa13.02□□□□□ -0.32
NPHP4-203ENST00000378169 GEMIN8Q9NWZ8 242 aaKnown RBP13.02□□□□□ -0.32
NPHP4-203ENST00000378169 NDOR1Q9UHB4 597 aa13.02□□□□□ -0.32
NPHP4-203ENST00000378169 AP3M1Q9Y2T2 418 aa13.02□□□□□ -0.32
NPHP4-203ENST00000378169 LOC100506127A0A0U1RQW1 187 aa13.02□□□□□ -0.32
NPHP4-203ENST00000378169 MATN2O00339 956 aa13.02□□□□□ -0.32
NPHP4-203ENST00000378169 NFATC1O95644 943 aa13.02□□□□□ -0.32
NPHP4-203ENST00000378169 PRNPP04156 253 aa13.02□□□□□ -0.32
NPHP4-203ENST00000378169 MTHFD1P11586 935 aaKnown RBP13.02□□□□□ -0.32
NPHP4-203ENST00000378169 PCYT1AP49585 367 aa13.02□□□□□ -0.32
NPHP4-203ENST00000378169 INO80DQ53TQ3 878 aaPredicted RBP13.02□□□□□ -0.32
NPHP4-203ENST00000378169 GALNT5Q7Z7M9 940 aa13.02□□□□□ -0.32
NPHP4-203ENST00000378169 PHYKPLQ8IUZ5 450 aa13.02□□□□□ -0.32
NPHP4-203ENST00000378169 SFRP1Q8N474 314 aa13.02□□□□□ -0.32
NPHP4-203ENST00000378169 OSBPL6Q9BZF3 934 aa13.02□□□□□ -0.32
NPHP4-203ENST00000378169 NSUN3Q9H649 340 aaKnown RBP13.02□□□□□ -0.32
NPHP4-203ENST00000378169 PSME2Q9UL46 239 aa13.02□□□□□ -0.32
NPHP4-203ENST00000378169 AXIN1O15169 862 aa13.02□□□□□ -0.33
NPHP4-203ENST00000378169 NR2F1P10589 423 aa13.02□□□□□ -0.33
NPHP4-203ENST00000378169 PRDX6P30041 224 aa13.02□□□□□ -0.33
NPHP4-203ENST00000378169 SSR2P43308 183 aa13.02□□□□□ -0.33
NPHP4-203ENST00000378169 DGKQP52824 942 aa13.02□□□□□ -0.33
NPHP4-203ENST00000378169 PHKG1Q16816 387 aa13.02□□□□□ -0.33
NPHP4-203ENST00000378169 SLC5A9Q2M3M2 681 aa13.02□□□□□ -0.33
NPHP4-203ENST00000378169 ARSIQ5FYB1 569 aa13.02□□□□□ -0.33
NPHP4-203ENST00000378169 SULT1C3Q6IMI6 304 aa13.02□□□□□ -0.33
NPHP4-203ENST00000378169 UMODL1-AS1Q8N2C9 162 aa13.02□□□□□ -0.33
NPHP4-203ENST00000378169 AADATQ8N5Z0 425 aa13.02□□□□□ -0.33
NPHP4-203ENST00000378169 OR14C36Q8NHC7 312 aa13.02□□□□□ -0.33
NPHP4-203ENST00000378169 PHF10Q8WUB8 498 aaKnown RBP13.02□□□□□ -0.33
NPHP4-203ENST00000378169 PNPLA3Q9NST1 481 aa13.02□□□□□ -0.33
NPHP4-203ENST00000378169 MARCH4Q9P2E8 410 aaPredicted RBP13.02□□□□□ -0.33
NPHP4-203ENST00000378169 KLHL20Q9Y2M5 609 aa13.02□□□□□ -0.33
NPHP4-203ENST00000378169 TNRC6CQ9HCJ0 1690 aaKnown RBP13.02□□□□□ -0.33
NPHP4-203ENST00000378169 E7ENX8 843 aa13.02□□□□□ -0.33
NPHP4-203ENST00000378169 OR1I1O60431 355 aa13.02□□□□□ -0.33
NPHP4-203ENST00000378169 GLDCP23378 1020 aa13.02□□□□□ -0.33
NPHP4-203ENST00000378169 SLC6A2P23975 617 aa13.02□□□□□ -0.33
NPHP4-203ENST00000378169 NTSP30990 170 aa13.02□□□□□ -0.33
NPHP4-203ENST00000378169 SCAPQ12770 1279 aa13.02□□□□□ -0.33
NPHP4-203ENST00000378169 PPP1R8Q12972 351 aaKnown RBP13.02□□□□□ -0.33
NPHP4-203ENST00000378169 ATP1A4Q13733 1029 aa13.02□□□□□ -0.33
NPHP4-203ENST00000378169 EMC10Q5UCC4 262 aa13.02□□□□□ -0.33
NPHP4-203ENST00000378169 GPR107Q5VW38 600 aa13.02□□□□□ -0.33
NPHP4-203ENST00000378169 KRT73Q86Y46 540 aa13.02□□□□□ -0.33
NPHP4-203ENST00000378169 CEP97Q8IW35 865 aa13.02□□□□□ -0.33
NPHP4-203ENST00000378169 BTN2A2Q8WVV5 523 aa13.02□□□□□ -0.33
NPHP4-203ENST00000378169 WDR6Q9NNW5 1121 aaKnown RBP13.02□□□□□ -0.33
NPHP4-203ENST00000378169 ELOVL7A1L3X0 281 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 SLC31A1O15431 190 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 DNTTP04053 509 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 IMPDH2P12268 514 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 CSF2RAP15509 400 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 SERPINB1P30740 379 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 MANFP55145 182 aaKnown RBP13.01□□□□□ -0.33
NPHP4-203ENST00000378169 EPGNQ6UW88 154 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 ZNF605Q86T29 641 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 C2CD4AQ8NCU7 369 aaPredicted RBP13.01□□□□□ -0.33
NPHP4-203ENST00000378169 DTNBP1Q96EV8 351 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 IMP4Q96G21 291 aaKnown RBP13.01□□□□□ -0.33
NPHP4-203ENST00000378169 C6orf62Q9GZU0 229 aaPredicted RBP13.01□□□□□ -0.33
NPHP4-203ENST00000378169 FNIP2Q9P278 1114 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 C2orf78A6NCI8 922 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 K7EPI3 171 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 ABLIM1O14639 778 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 KERAO60938 352 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 SLC35E2BP0CK96 405 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 AOC1P19801 751 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 MTHFRP42898 656 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 CASP9P55211 416 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 MRPS15P82914 257 aaKnown RBP13.01□□□□□ -0.33
NPHP4-203ENST00000378169 SF1Q15637 639 aaKnown RBP13.01□□□□□ -0.33
NPHP4-203ENST00000378169 ZBTB6Q15916 424 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 PPP1R3AQ16821 1122 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 CHST15Q7LFX5 561 aaPredicted RBP13.01□□□□□ -0.33
NPHP4-203ENST00000378169 PAGE2Q7Z2X7 111 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 SLC22A17Q8WUG5 538 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 CANT1Q8WVQ1 401 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 CLIP3Q96DZ5 547 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 SLC47A1Q96FL8 570 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 TMEM175Q9BSA9 504 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 PGAP2Q9UHJ9 254 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 GSAPA4D1B5 854 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 FGF18O76093 207 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 PCCBP05166 539 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 NOS3P29474 1203 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 CYP4F3Q08477 520 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 NIPAL4Q0D2K0 466 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 PPIGQ13427 754 aaKnown RBP eCLIP13.01□□□□□ -0.331e-6■■■□□ 16
NPHP4-203ENST00000378169 CARD16Q5EG05 197 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 ZDHHC20Q5W0Z9 365 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 CNKSR3Q6P9H4 555 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 KBTBD2Q8IY47 623 aa13.01□□□□□ -0.33
NPHP4-203ENST00000378169 RGL4Q8IZJ4 473 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms