RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 SRPRAP08240 638 aaKnown RBP2.06□□□□□ -2.08
VPS13A-206ENST00000376646 SELLP14151 372 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 TMEM11P17152 192 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 ANXA7P20073 488 aaKnown RBP2.06□□□□□ -2.08
VPS13A-206ENST00000376646 NNMTP40261 264 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 SLC15A1P46059 708 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 NRIP1P48552 1158 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 HOXA1P49639 335 aaPredicted RBP2.06□□□□□ -2.08
VPS13A-206ENST00000376646 RAD23BP54727 409 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 GNB1P62873 340 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 CDC16Q13042 620 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 SFMBT2Q5VUG0 894 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 FRG2Q64ET8 278 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 TMEM198Q66K66 360 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 FAM53AQ6NSI3 398 aaPredicted RBP2.06□□□□□ -2.08
VPS13A-206ENST00000376646 SLC27A1Q6PCB7 646 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 PIWIL4Q7Z3Z4 852 aaKnown RBP2.06□□□□□ -2.08
VPS13A-206ENST00000376646 LINC00346Q8IVM7 164 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 CNBD1Q8NA66 436 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 ADAD2Q8NCV1 583 aaKnown RBP2.06□□□□□ -2.08
VPS13A-206ENST00000376646 OR8K5Q8NH50 307 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 TM9SF4Q92544 642 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 RRNAD1Q96FB5 475 aaKnown RBP2.06□□□□□ -2.08
VPS13A-206ENST00000376646 HARBI1Q96MB7 349 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 GAD1Q99259 594 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 TRPC7Q9HCX4 862 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 KLHL9Q9P2J3 617 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 IGKV3D-20A0A0C4DH25 116 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 OR2A25A4D2G3 310 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 BLOC1S5-TXNDC5H3BN57 136 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 ZNF500O60304 480 aaPredicted RBP2.06□□□□□ -2.08
VPS13A-206ENST00000376646 WISP2O76076 250 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 ADRB2P07550 413 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 SAT1P21673 171 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 CHRNB4P30926 498 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 ARCN1P48444 511 aaKnown RBP2.06□□□□□ -2.08
VPS13A-206ENST00000376646 HSD17B4P51659 736 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 EEF1A1P68104 462 aaKnown RBP2.06□□□□□ -2.08
VPS13A-206ENST00000376646 PLIN5Q00G26 463 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 PPIGQ13427 754 aaKnown RBP eCLIP2.06□□□□□ -2.08
VPS13A-206ENST00000376646 DECR1Q16698 335 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 EEF1A1P5Q5VTE0 462 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 ACSM2BQ68CK6 577 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 CFAP77Q6ZQR2 320 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 TRPT1Q86TN4 253 aaKnown RBP2.06□□□□□ -2.08
VPS13A-206ENST00000376646 ZNF843Q8N446 348 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 SLC22A18Q96BI1 424 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 OXNAD1Q96HP4 312 aaPredicted RBP2.06□□□□□ -2.08
VPS13A-206ENST00000376646 SEPT5Q99719 369 aaPredicted RBP2.06□□□□□ -2.08
VPS13A-206ENST00000376646 PSD2Q9BQI7 771 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 NEURL2Q9BR09 285 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 LRMDAQ9H2I8 198 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 BICC1Q9H694 974 aaKnown RBP2.06□□□□□ -2.08
VPS13A-206ENST00000376646 FKRPQ9H9S5 495 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 PTTG2Q9NZH5 202 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 MRPL15Q9P015 296 aaKnown RBP2.06□□□□□ -2.08
VPS13A-206ENST00000376646 CHORDC1Q9UHD1 332 aaPredicted RBP2.06□□□□□ -2.08
VPS13A-206ENST00000376646 MMP24Q9Y5R2 645 aa2.06□□□□□ -2.08
VPS13A-206ENST00000376646 MAGED1Q9Y5V3 778 aaPredicted RBP2.06□□□□□ -2.08
VPS13A-206ENST00000376646 ARHGEF40Q8TER5 1519 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 A0A1B0GVY2 172 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 CDRT15L2A8MXV6 281 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 HHLA1C9JL84 531 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 M0QZ24 198 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 SH2B2O14492 632 aaPredicted RBP2.05□□□□□ -2.08
VPS13A-206ENST00000376646 ATP2A1O14983 1001 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 ANKRD28O15084 1053 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 ADAM20O43506 726 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 SYNGR3O43761 229 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 PON1P27169 355 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 HOXA13P31271 388 aaPredicted RBP2.05□□□□□ -2.08
VPS13A-206ENST00000376646 MAP2K2P36507 400 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 MMP14P50281 582 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 SUOXP51687 545 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 TAS2R40P59535 323 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 IRX6P78412 446 aaPredicted RBP2.05□□□□□ -2.08
VPS13A-206ENST00000376646 MRPS5P82675 430 aaKnown RBP2.05□□□□□ -2.08
VPS13A-206ENST00000376646 TFAP4Q01664 338 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 MBTD1Q05BQ5 628 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 PCLAFQ15004 111 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 ADIPOQQ15848 244 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 GPR139Q6DWJ6 353 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 RBMS3Q6XE24 437 aaKnown RBP2.05□□□□□ -2.08
VPS13A-206ENST00000376646 AACSQ86V21 672 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 KBTBD6Q86V97 674 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 RNF168Q8IYW5 571 aaPredicted RBP2.05□□□□□ -2.08
VPS13A-206ENST00000376646 TAAR8Q969N4 342 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 C17orf77Q96MU5 243 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 ZNF599Q96NL3 588 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 ABHD1Q96SE0 405 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 PAFAH2Q99487 392 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 TEX12Q9BXU0 123 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 KLHL4Q9C0H6 718 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 HRH4Q9H3N8 390 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 PIGMQ9H3S5 423 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 CWC15Q9P013 229 aaKnown RBP2.05□□□□□ -2.08
VPS13A-206ENST00000376646 COPG2Q9UBF2 871 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 SEC63Q9UGP8 760 aaKnown RBP2.05□□□□□ -2.08
VPS13A-206ENST00000376646 CMAHPQ9Y471 501 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 JRKLQ9Y4A0 524 aa2.05□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms