RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 SNX20Q7Z614 316 aa21.25■□□□□ 0.99
CCDC28B-201ENST00000373602 NXPE1Q8N323 547 aa21.25■□□□□ 0.99
CCDC28B-201ENST00000373602 GPR150Q8NGU9 434 aa21.25■□□□□ 0.99
CCDC28B-201ENST00000373602 OR2L2Q8NH16 312 aa21.25■□□□□ 0.99
CCDC28B-201ENST00000373602 MED8Q96G25 268 aa21.25■□□□□ 0.99
CCDC28B-201ENST00000373602 LINC00615Q96LM1 132 aaPredicted RBP21.25■□□□□ 0.99
CCDC28B-201ENST00000373602 TMEM121Q9BTD3 319 aa21.25■□□□□ 0.99
CCDC28B-201ENST00000373602 ZNF768Q9H5H4 540 aaKnown RBP21.25■□□□□ 0.99
CCDC28B-201ENST00000373602 LRRC40Q9H9A6 602 aa21.25■□□□□ 0.99
CCDC28B-201ENST00000373602 ACSL5Q9ULC5 683 aa21.25■□□□□ 0.99
CCDC28B-201ENST00000373602 XKR5Q6UX68 686 aa21.24■□□□□ 0.99
CCDC28B-201ENST00000373602 NLGN4XQ8N0W4 816 aa21.24■□□□□ 0.99
CCDC28B-201ENST00000373602 NLGN4YQ8NFZ3 816 aaPredicted RBP21.24■□□□□ 0.99
CCDC28B-201ENST00000373602 NAT14Q8WUY8 206 aa21.24■□□□□ 0.99
CCDC28B-201ENST00000373602 UBE2Q2Q8WVN8 375 aa21.24■□□□□ 0.99
CCDC28B-201ENST00000373602 DCUN1D1Q96GG9 259 aa21.24■□□□□ 0.99
CCDC28B-201ENST00000373602 ZDHHC12Q96GR4 267 aa21.24■□□□□ 0.99
CCDC28B-201ENST00000373602 DNAJC1Q96KC8 554 aaKnown RBP21.24■□□□□ 0.99
CCDC28B-201ENST00000373602 SLC12A9Q9BXP2 914 aa21.24■□□□□ 0.99
CCDC28B-201ENST00000373602 TSGA10Q9BZW7 698 aa21.24■□□□□ 0.99
CCDC28B-201ENST00000373602 TMEM184BQ9Y519 407 aaPredicted RBP21.24■□□□□ 0.99
CCDC28B-201ENST00000373602 CCL22O00626 93 aa21.23■□□□□ 0.99
CCDC28B-201ENST00000373602 PSMD3O43242 534 aa21.23■□□□□ 0.99
CCDC28B-201ENST00000373602 AP2A1O95782 977 aa21.23■□□□□ 0.99
CCDC28B-201ENST00000373602 RALBP11234 206 aa21.23■□□□□ 0.99
CCDC28B-201ENST00000373602 MTHFD1P11586 935 aaKnown RBP21.23■□□□□ 0.99
CCDC28B-201ENST00000373602 LIFP15018 202 aa21.23■□□□□ 0.99
CCDC28B-201ENST00000373602 MAP4P27816 1152 aaKnown RBP21.23■□□□□ 0.99
CCDC28B-201ENST00000373602 SEPHS1P49903 392 aa21.23■□□□□ 0.99
CCDC28B-201ENST00000373602 GPR33Q49SQ1 333 aa21.23■□□□□ 0.99
CCDC28B-201ENST00000373602 TIPARPQ7Z3E1 657 aaKnown RBP21.23■□□□□ 0.99
CCDC28B-201ENST00000373602 HEXDCQ8WVB3 486 aa21.23■□□□□ 0.99
CCDC28B-201ENST00000373602 KLHL6Q8WZ60 621 aa21.23■□□□□ 0.99
CCDC28B-201ENST00000373602 EXTL1Q92935 676 aa21.23■□□□□ 0.99
CCDC28B-201ENST00000373602 INSM2Q96T92 566 aaPredicted RBP21.23■□□□□ 0.99
CCDC28B-201ENST00000373602 COPS8Q99627 209 aa21.23■□□□□ 0.99
CCDC28B-201ENST00000373602 WWP1Q9H0M0 922 aa21.23■□□□□ 0.99
CCDC28B-201ENST00000373602 FAM96AQ9H5X1 160 aa21.23■□□□□ 0.99
CCDC28B-201ENST00000373602 H7C0S8 307 aa21.22■□□□□ 0.99
CCDC28B-201ENST00000373602 KIF1CO43896 1103 aaKnown RBP21.22■□□□□ 0.99
CCDC28B-201ENST00000373602 RASSF9O75901 435 aa21.22■□□□□ 0.99
CCDC28B-201ENST00000373602 STK17BO94768 372 aa21.22■□□□□ 0.99
CCDC28B-201ENST00000373602 DLGAP3O95886 979 aa21.22■□□□□ 0.99
CCDC28B-201ENST00000373602 TPH1P17752 444 aa21.22■□□□□ 0.99
CCDC28B-201ENST00000373602 MC4RP32245 332 aa21.22■□□□□ 0.99
CCDC28B-201ENST00000373602 PRLHRP49683 370 aa21.22■□□□□ 0.99
CCDC28B-201ENST00000373602 GSDMDP57764 484 aa21.22■□□□□ 0.99
CCDC28B-201ENST00000373602 CYP4F2P78329 520 aa21.22■□□□□ 0.99
CCDC28B-201ENST00000373602 FOXM1Q08050 763 aa21.22■□□□□ 0.99
CCDC28B-201ENST00000373602 CACHD1Q5VU97 1274 aa21.22■□□□□ 0.99
CCDC28B-201ENST00000373602 IRGCQ6NXR0 463 aa21.22■□□□□ 0.99
CCDC28B-201ENST00000373602 FAM92BQ6ZTR7 304 aa21.22■□□□□ 0.99
CCDC28B-201ENST00000373602 EXD3Q8N9H8 876 aa21.22■□□□□ 0.99
CCDC28B-201ENST00000373602 ZFPM2Q8WW38 1151 aa21.22■□□□□ 0.99
CCDC28B-201ENST00000373602 TRIT1Q9H3H1 467 aaKnown RBP21.22■□□□□ 0.99
CCDC28B-201ENST00000373602 IMP3Q9NV31 184 aaKnown RBP21.22■□□□□ 0.99
CCDC28B-201ENST00000373602 NLE1Q9NVX2 485 aaPredicted RBP21.22■□□□□ 0.99
CCDC28B-201ENST00000373602 SEMA5BQ9P283 1151 aa21.22■□□□□ 0.99
CCDC28B-201ENST00000373602 GUCA1BQ9UMX6 200 aa21.22■□□□□ 0.99
CCDC28B-201ENST00000373602 COL6A6A6NMZ7 2263 aa21.22■□□□□ 0.99
CCDC28B-201ENST00000373602 IGLV3-16A0A075B6K0 115 aa21.21■□□□□ 0.99
CCDC28B-201ENST00000373602 TRBV5-4A0A0C4DH59 114 aa21.21■□□□□ 0.99
CCDC28B-201ENST00000373602 CFAP99D6REC4 459 aa21.21■□□□□ 0.99
CCDC28B-201ENST00000373602 KRT86O43790 486 aa21.21■□□□□ 0.99
CCDC28B-201ENST00000373602 ATP1B2P14415 290 aaPredicted RBP21.21■□□□□ 0.99
CCDC28B-201ENST00000373602 STIP1P31948 543 aaKnown RBP21.21■□□□□ 0.99
CCDC28B-201ENST00000373602 SH3BP2P78314 561 aa21.21■□□□□ 0.99
CCDC28B-201ENST00000373602 OASLQ15646 514 aaKnown RBP21.21■□□□□ 0.99
CCDC28B-201ENST00000373602 TBR1Q16650 682 aa21.21■□□□□ 0.99
CCDC28B-201ENST00000373602 SEL1L2Q5TEA6 688 aa21.21■□□□□ 0.99
CCDC28B-201ENST00000373602 KLHL35Q6PF15 583 aa21.21■□□□□ 0.99
CCDC28B-201ENST00000373602 ZNF605Q86T29 641 aa21.21■□□□□ 0.99
CCDC28B-201ENST00000373602 ATG4AQ8WYN0 398 aa21.21■□□□□ 0.99
CCDC28B-201ENST00000373602 C12orf66Q96MD2 445 aa21.21■□□□□ 0.99
CCDC28B-201ENST00000373602 FRMD8P1Q9BZ68 369 aaPredicted RBP21.21■□□□□ 0.99
CCDC28B-201ENST00000373602 ZDHHC3Q9NYG2 299 aa21.21■□□□□ 0.99
CCDC28B-201ENST00000373602 CFAP20Q9Y6A4 193 aaKnown RBP21.21■□□□□ 0.99
CCDC28B-201ENST00000373602 LIASO43766 372 aa21.2■□□□□ 0.98
CCDC28B-201ENST00000373602 CDKN1CP49918 316 aaPredicted RBP21.2■□□□□ 0.98
CCDC28B-201ENST00000373602 PPP1CAP62136 330 aa21.2■□□□□ 0.98
CCDC28B-201ENST00000373602 MAP7Q14244 749 aa21.2■□□□□ 0.98
CCDC28B-201ENST00000373602 IL11RAQ14626 422 aa21.2■□□□□ 0.98
CCDC28B-201ENST00000373602 POU6F1Q14863 301 aa21.2■□□□□ 0.98
CCDC28B-201ENST00000373602 PLCL1Q15111 1095 aa21.2■□□□□ 0.98
CCDC28B-201ENST00000373602 CAPRIN2Q6IMN6 1127 aaKnown RBP21.2■□□□□ 0.98
CCDC28B-201ENST00000373602 SLC13A5Q86YT5 568 aaPredicted RBP21.2■□□□□ 0.98
CCDC28B-201ENST00000373602 CFAP206Q8IYR0 622 aa21.2■□□□□ 0.98
CCDC28B-201ENST00000373602 TAB3Q8N5C8 712 aaPredicted RBP21.2■□□□□ 0.98
CCDC28B-201ENST00000373602 LILRA3Q8N6C8 439 aaPredicted RBP21.2■□□□□ 0.98
CCDC28B-201ENST00000373602 SPDYE1Q8NFV5 336 aaPredicted RBP21.2■□□□□ 0.98
CCDC28B-201ENST00000373602 HM13Q8TCT9 377 aa21.2■□□□□ 0.98
CCDC28B-201ENST00000373602 STYXQ8WUJ0 223 aa21.2■□□□□ 0.98
CCDC28B-201ENST00000373602 CDKN2AIPNLQ96HQ2 116 aa21.2■□□□□ 0.98
CCDC28B-201ENST00000373602 RMDN2Q96LZ7 410 aa21.2■□□□□ 0.98
CCDC28B-201ENST00000373602 OR6C1Q96RD1 312 aa21.2■□□□□ 0.98
CCDC28B-201ENST00000373602 CCM2Q9BSQ5 444 aa21.2■□□□□ 0.98
CCDC28B-201ENST00000373602 FAM8A1Q9UBU6 413 aa21.2■□□□□ 0.98
CCDC28B-201ENST00000373602 ATMQ13315 3056 aa21.2■□□□□ 0.98
CCDC28B-201ENST00000373602 LOC101059948A0A1B0GTJ6 334 aa21.19■□□□□ 0.98
CCDC28B-201ENST00000373602 C17orf113A0A1B0GUU1 675 aa21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms