RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 RMI1Q9H9A7 625 aa18.18■□□□□ 0.5
SHANK1-202ENST00000359082 DEC1Q9P2X7 70 aa18.18■□□□□ 0.5
SHANK1-202ENST00000359082 SLC30A4O14863 429 aa18.18■□□□□ 0.5
SHANK1-202ENST00000359082 STK16O75716 305 aa18.18■□□□□ 0.5
SHANK1-202ENST00000359082 TLR1Q15399 786 aa18.18■□□□□ 0.5
SHANK1-202ENST00000359082 KREMEN1Q96MU8 473 aa18.18■□□□□ 0.5
SHANK1-202ENST00000359082 GFM1Q96RP9 751 aaKnown RBP18.18■□□□□ 0.5
SHANK1-202ENST00000359082 SP140LQ9H930 580 aa18.18■□□□□ 0.5
SHANK1-202ENST00000359082 TBC1D17Q9HA65 648 aa18.18■□□□□ 0.5
SHANK1-202ENST00000359082 DUS2Q9NX74 493 aaKnown RBP18.18■□□□□ 0.5
SHANK1-202ENST00000359082 NDRG2Q9UN36 371 aaKnown RBP18.18■□□□□ 0.5
SHANK1-202ENST00000359082 KCND1Q9NSA2 647 aa18.18■□□□□ 0.5
SHANK1-202ENST00000359082 TGFB1I1O43294 461 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 PAPSS2O95340 614 aaPredicted RBP18.17■□□□□ 0.5
SHANK1-202ENST00000359082 SMIM35A0A1B0GVV1 85 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 LRRC72A6NJI9 287 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 NMBRP28336 390 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 CRY2Q49AN0 593 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 GHDCQ8N2G8 530 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 SPATA22Q8NHS9 363 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 FAM163AQ96GL9 167 aaPredicted RBP18.17■□□□□ 0.5
SHANK1-202ENST00000359082 CCDC28BQ9BUN5 200 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 ELAC1Q9H777 363 aaKnown RBP18.17■□□□□ 0.5
SHANK1-202ENST00000359082 TUBA8Q9NY65 449 aaPredicted RBP18.17■□□□□ 0.5
SHANK1-202ENST00000359082 IFT80Q9P2H3 777 aaPredicted RBP18.17■□□□□ 0.5
SHANK1-202ENST00000359082 GNB5O14775 395 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 KMOO15229 486 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 PGDP52209 483 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 PDX1P52945 283 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 ERVK-21P61565 698 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 TUSC3Q13454 348 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 PLET1Q6UQ28 207 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 FAM110BQ8TC76 370 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 COMMD4Q9H0A8 199 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 COL1A2P08123 1366 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 C5orf60A6NFR6 353 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 RHPN2P1A8MT19 583 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 ANGPTL1O95841 491 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 BMP6P22004 513 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 E2F2Q14209 437 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 XKR4Q5GH76 650 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 PYROXD2Q8N2H3 581 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 AGAP2Q99490 1192 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 RAB26Q9ULW5 256 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 CLCNKBP51801 687 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 RHBDL3P58872 404 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 RANBP3LQ86VV4 465 aaPredicted RBP18.17■□□□□ 0.5
SHANK1-202ENST00000359082 RBM15BQ8NDT2 890 aaKnown RBP18.17■□□□□ 0.5
SHANK1-202ENST00000359082 TRPM4Q8TD43 1214 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 ALG3Q92685 438 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 SPATA9Q9BWV2 254 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 ZNF224Q9NZL3 707 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 CCDC85CA6NKD9 419 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 CLDN4O14493 209 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 ELNP15502 786 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 LAG3P18627 525 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 ADRA1BP35368 520 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 ACAP2Q15057 778 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 SERPINA9Q86WD7 417 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 CHERPQ8IWX8 916 aaKnown RBP18.17■□□□□ 0.5
SHANK1-202ENST00000359082 TBATAQ96M53 351 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 DKK3Q9UBP4 350 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 TCAF1Q9Y4C2 921 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 GMEB1Q9Y692 573 aa18.17■□□□□ 0.5
SHANK1-202ENST00000359082 OGNP20774 298 aaKnown RBP18.16■□□□□ 0.5
SHANK1-202ENST00000359082 AZGP1P25311 298 aaKnown RBP18.16■□□□□ 0.5
SHANK1-202ENST00000359082 ARMC10Q8N2F6 343 aa18.16■□□□□ 0.5
SHANK1-202ENST00000359082 CCDC54Q8NEL0 328 aa18.16■□□□□ 0.5
SHANK1-202ENST00000359082 DGCR14Q96DF8 476 aaKnown RBP18.16■□□□□ 0.5
SHANK1-202ENST00000359082 RPL26L1Q9UNX3 145 aaKnown RBP18.16■□□□□ 0.5
SHANK1-202ENST00000359082 FASTKD3Q14CZ7 662 aaKnown RBP18.16■□□□□ 0.5
SHANK1-202ENST00000359082 TYSND1Q2T9J0 566 aa18.16■□□□□ 0.5
SHANK1-202ENST00000359082 LINGO2Q7L985 606 aa18.16■□□□□ 0.5
SHANK1-202ENST00000359082 NDST3O95803 873 aa18.16■□□□□ 0.5
SHANK1-202ENST00000359082 ITGB5P18084 799 aa18.16■□□□□ 0.5
SHANK1-202ENST00000359082 PSMA1P25786 263 aaKnown RBP18.16■□□□□ 0.5
SHANK1-202ENST00000359082 SPPL2BQ8TCT7 592 aa18.16■□□□□ 0.5
SHANK1-202ENST00000359082 OR4F21O95013 312 aa18.16■□□□□ 0.5
SHANK1-202ENST00000359082 EIF2S3P41091 472 aaKnown RBP18.16■□□□□ 0.5
SHANK1-202ENST00000359082 TXNL4AP83876 142 aaKnown RBP18.16■□□□□ 0.5
SHANK1-202ENST00000359082 ARSHQ5FYA8 562 aa18.16■□□□□ 0.5
SHANK1-202ENST00000359082 SLC8B1Q6J4K2 584 aa18.16■□□□□ 0.5
SHANK1-202ENST00000359082 OR10H4Q8NGA5 316 aa18.16■□□□□ 0.5
SHANK1-202ENST00000359082 SMPDL3BQ92485 455 aa18.16■□□□□ 0.5
SHANK1-202ENST00000359082 SLC38A4Q969I6 547 aa18.16■□□□□ 0.5
SHANK1-202ENST00000359082 C12orf4Q9NQ89 552 aa18.16■□□□□ 0.5
SHANK1-202ENST00000359082 GRIN2DO15399 1336 aa18.16■□□□□ 0.5
SHANK1-202ENST00000359082 CD48P09326 243 aa18.16■□□□□ 0.5
SHANK1-202ENST00000359082 AHCYP23526 432 aa18.16■□□□□ 0.5
SHANK1-202ENST00000359082 DEFB115Q30KQ5 88 aa18.16■□□□□ 0.5
SHANK1-202ENST00000359082 UBXN11Q5T124 520 aa18.16■□□□□ 0.5
SHANK1-202ENST00000359082 AMIGO1Q86WK6 493 aa18.16■□□□□ 0.5
SHANK1-202ENST00000359082 PRSS58Q8IYP2 241 aa18.16■□□□□ 0.5
SHANK1-202ENST00000359082 TNFAIP8L1Q8WVP5 186 aa18.16■□□□□ 0.5
SHANK1-202ENST00000359082 HBEGFQ99075 208 aa18.16■□□□□ 0.5
SHANK1-202ENST00000359082 MGME1Q9BQP7 344 aa18.16■□□□□ 0.5
SHANK1-202ENST00000359082 SMPD3Q9NY59 655 aaPredicted RBP18.16■□□□□ 0.5
SHANK1-202ENST00000359082 TBC1D14Q9P2M4 693 aa18.16■□□□□ 0.5
SHANK1-202ENST00000359082 NOBOXO60393 691 aa18.15■□□□□ 0.5
SHANK1-202ENST00000359082 CILPO75339 1184 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms