RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 DCBLD1Q8N8Z6 715 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 PDZD8Q8NEN9 1154 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 DBF4BQ8NFT6 615 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 OR6B3Q8NGW1 331 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 ACMSDQ8TDX5 336 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 AGAP11Q8TF27 550 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 SLC22A17Q8WUG5 538 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 PIH1D2Q8WWB5 315 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 OVCA2Q8WZ82 227 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 P3H4Q92791 437 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 CERS2Q96G23 380 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 TGS1Q96RS0 853 aaKnown RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 UHRF1Q96T88 793 aaPredicted RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 KLF6Q99612 283 aaPredicted RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 ZBTB26Q9HCK0 441 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 DMAP1Q9NPF5 467 aaPredicted RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 SAR1AQ9NR31 198 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 SNX15Q9NRS6 342 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 SEPT11Q9NVA2 429 aaKnown RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 MPP6Q9NZW5 540 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 COPG2Q9UBF2 871 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 ZDHHC2Q9UIJ5 367 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 SBDSQ9Y3A5 250 aaKnown RBP eCLIP2.3□□□□□ -2.04
VPS54-202ENST00000354504 TCAF1Q9Y4C2 921 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 NUP214P35658 2090 aaPredicted RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 ZNF469Q96JG9 3925 aaPredicted RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 CUBNO60494 3623 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 TRBV5-3A0A0A0MS03 114 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 GOLGA6L10A0A0M3HER8 536 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 A0A0U1RQG5 324 aaPredicted RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 CCDC154A6NI56 674 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 TRIM64CA6NLI5 447 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 RASA4BC9J798 803 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 NPIPB8E9PQR5 432 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 SGK1O00141 431 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 KCNK1O00180 336 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 CASQ2O14958 399 aaPredicted RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 RASA4O43374 803 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 USP12O75317 370 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 CABYRO75952 493 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 CBX6O95503 412 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 CHRNGP07510 517 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 PDHA1P08559 390 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 CISD3P0C7P0 127 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 FAHP16930 419 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 SDC4P31431 198 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 MAP2K2P36507 400 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 FDFT1P37268 417 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 THPOP40225 353 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 VPS41P49754 854 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 LIMK1P53667 647 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 FOXA1P55317 472 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 BCAR1P56945 870 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 MPP1Q00013 466 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 CD83Q01151 205 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 DSC2Q02487 901 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 GALNT1Q10472 559 aaPredicted RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 POLD3Q15054 466 aaPredicted RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 OR4D1Q15615 310 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 AAK1Q2M2I8 961 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 SLC5A9Q2M3M2 681 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 PREPLQ4J6C6 727 aaPredicted RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 SLC39A12Q504Y0 691 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 ACSBG2Q5FVE4 666 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 PRSS55Q6UWB4 352 aaPredicted RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 C4orf50Q6ZRC1 276 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 KANSL1Q7Z3B3 1105 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 SPATA21Q7Z572 469 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 RFX6Q8HWS3 928 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 LRRC56Q8IYG6 542 aaPredicted RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 STPG3Q8N7X2 389 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 ATP11CQ8NB49 1132 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 GLB1L3Q8NCI6 653 aaPredicted RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 BBOF1Q8ND07 529 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 PJA1Q8NG27 643 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 OR2T11Q8NH01 316 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 SVIPQ8NHG7 77 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 GDAP1Q8TB36 358 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 LKAAEAR1Q8TD35 194 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 HOXB13Q92826 284 aaPredicted RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 INPP5DQ92835 1189 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 ZNF707Q96C28 371 aaPredicted RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 IGSF21Q96ID5 467 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 TEX37Q96LM6 180 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 OR52B2Q96RD2 323 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 TUBGCP5Q96RT8 1024 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 LYSMD1Q96S90 227 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 NCAPGQ9BPX3 1015 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 TBC1D10AQ9BXI6 508 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 KRTAP9-3Q9BYQ3 159 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 FRMD8Q9BZ67 464 aaPredicted RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 XRN2Q9H0D6 950 aaKnown RBP eCLIP2.3□□□□□ -2.04
VPS54-202ENST00000354504 CHST8Q9H2A9 424 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 RETREG1Q9H6L5 497 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 SUDS3Q9H7L9 328 aaPredicted RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 SYNPO2LQ9H987 977 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 MEAF6Q9HAF1 191 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 GLOD4Q9HC38 313 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 NGRNQ9NPE2 291 aaKnown RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 ABCC13Q9NSE7 274 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms