RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 COMMD8Q9NX08 183 aa13.71□□□□□ -0.22
TRIM4-201ENST00000349062 ITM2BQ9Y287 266 aa13.71□□□□□ -0.22
TRIM4-201ENST00000349062 CHD5Q8TDI0 1954 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 A0A1B0GTW7 788 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 ARHGAP10A1A4S6 786 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 TTC34A8MYJ7 566 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 KPNA3O00505 521 aaPredicted RBP13.7□□□□□ -0.22
TRIM4-201ENST00000349062 AKAP10O43572 662 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 FOXD2O60548 495 aaPredicted RBP13.7□□□□□ -0.22
TRIM4-201ENST00000349062 HLA-EP13747 358 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 SLC2A4P14672 509 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 NFATC2Q13469 925 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 NFYCQ13952 458 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 ACBD5Q5T8D3 534 aaPredicted RBP13.7□□□□□ -0.22
TRIM4-201ENST00000349062 SLC22A15Q8IZD6 547 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 MIER2Q8N344 545 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 ZFP28Q8NHY6 868 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 HSPBAP1Q96EW2 488 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 STK39Q9UEW8 545 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 TIPRLO75663 272 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 TRBC1P01850 177 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 MTHFD1P11586 935 aaKnown RBP13.7□□□□□ -0.22
TRIM4-201ENST00000349062 LBPP18428 481 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 CAPN3P20807 821 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 ITPKAP23677 461 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 DNAJB1P25685 340 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 RPL5P46777 297 aaKnown RBP13.7□□□□□ -0.22
TRIM4-201ENST00000349062 NEK2P51955 445 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 TYSND1Q2T9J0 566 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 LETMD1Q6P1Q0 360 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 PGM2L1Q6PCE3 622 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 SERPINA13PQ6UXR4 307 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 SPPL2CQ8IUH8 684 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 PGAM4Q8N0Y7 254 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 RNF175Q8N4F7 328 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 EME1Q96AY2 570 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 FAR2Q96K12 515 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 PPM1MQ96MI6 270 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 HERC2P3Q9BVR0 1158 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 Q9H521 79 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 IGFLR1Q9H665 355 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 MEAF6Q9HAF1 191 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 UBAP1Q9NZ09 502 aa13.7□□□□□ -0.22
TRIM4-201ENST00000349062 PABPN1LA6NDY0 278 aaKnown RBP13.69□□□□□ -0.22
TRIM4-201ENST00000349062 PRR23AA6NEV1 266 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 SAC3D1A6NKF1 404 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 RHOP08100 348 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 EFNA1P20827 205 aaPredicted RBP13.69□□□□□ -0.22
TRIM4-201ENST00000349062 HMGCLP35914 325 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 SNRPD1P62314 119 aaKnown RBP13.69□□□□□ -0.22
TRIM4-201ENST00000349062 XIAPP98170 497 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 ACVR1Q04771 509 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 KCTD21Q4G0X4 260 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 ARSIQ5FYB1 569 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 AARS2Q5JTZ9 985 aaKnown RBP13.69□□□□□ -0.22
TRIM4-201ENST00000349062 Q6ZVL8 140 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 FUNDC1Q8IVP5 155 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 OVCA2Q8WZ82 227 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 SEPHS2Q99611 448 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 PKP2Q99959 881 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 DCUN1D5Q9BTE7 237 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 DERL2Q9GZP9 239 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 ARL15Q9NXU5 204 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 EPS15L1Q9UBC2 864 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 NDUFAF1Q9Y375 327 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 POLR3HQ9Y535 204 aaPredicted RBP13.69□□□□□ -0.22
TRIM4-201ENST00000349062 BRWD1Q9NSI6 2320 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 SEC24DO94855 1032 aaPredicted RBP13.69□□□□□ -0.22
TRIM4-201ENST00000349062 ATP5BP06576 529 aaKnown RBP13.69□□□□□ -0.22
TRIM4-201ENST00000349062 CTSAP10619 480 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 PCSK6P29122 969 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 PTGER3P43115 390 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 ERVPABLB-1P60509 514 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 IMPG1Q17R60 797 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 ZNF423Q2M1K9 1284 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 RARS2Q5T160 578 aaKnown RBP13.69□□□□□ -0.22
TRIM4-201ENST00000349062 AAGABQ6PD74 315 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 LARP4Q71RC2 724 aaKnown RBP eCLIP13.69□□□□□ -0.22
TRIM4-201ENST00000349062 LRTOMTQ8WZ04 291 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 ZNF689Q96CS4 500 aaPredicted RBP13.69□□□□□ -0.22
TRIM4-201ENST00000349062 TRMT2BQ96GJ1 504 aaKnown RBP13.69□□□□□ -0.22
TRIM4-201ENST00000349062 B4GALT6Q9UBX8 382 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 SUN2Q9UH99 717 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 SLC25A13Q9UJS0 675 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 COQ6Q9Y2Z9 468 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 FFAR2O15552 330 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 LRATO95237 230 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 TFAP2AP05549 437 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 PPM1AP35813 382 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 RPL38P63173 70 aaKnown RBP13.69□□□□□ -0.22
TRIM4-201ENST00000349062 ABRQ12979 859 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 MYLK3Q32MK0 819 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 TCEAL5Q5H9L2 206 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 CRTC1Q6UUV9 634 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 NECAB2Q7Z6G3 386 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 C7orf61Q8IZ16 206 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 PQLC1Q8N2U9 271 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 OR4F6Q8NGB9 312 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 OR56A4Q8NGH8 313 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 GPR150Q8NGU9 434 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms