RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 NIPAL1Q6NVV3 410 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 SLC43A3Q8NBI5 491 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 APOLD1Q96LR9 279 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 TBL1XO60907 577 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 NTSR2O95665 410 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 LHCGRP22888 699 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 ADGRD1Q6QNK2 874 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 PMM1Q92871 262 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 YTHDF1Q9BYJ9 559 aaKnown RBP13.72□□□□□ -0.21
CSPG4-201ENST00000308508 MIOSQ9NXC5 875 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 SLC15A1P46059 708 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 GHDCQ8N2G8 530 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 ASB12Q8WXK4 309 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 ANKHQ9HCJ1 492 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 PER2O15055 1255 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 RPP40O75818 363 aaKnown RBP13.72□□□□□ -0.21
CSPG4-201ENST00000308508 HSD3B2P26439 372 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 ICAM3P32942 547 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 COLEC12Q5KU26 742 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 TOMM5Q8N4H5 51 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 POLR2J2Q9GZM3 115 aaKnown RBP13.72□□□□□ -0.21
CSPG4-201ENST00000308508 ATG13O75143 517 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 MC1RQ01726 317 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 PRAMEF18Q5VWM3 479 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 CACUL1Q86Y37 369 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 OR2L8Q8NGY9 312 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 DNAJB8Q8NHS0 232 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 C8orf48Q96LL4 319 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 APLP1P51693 650 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 GALNT7Q86SF2 657 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 SYVN1Q86TM6 617 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 PARGQ86W56 976 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 OR5K1Q8NHB7 308 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 MALT1Q9UDY8 824 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 C2orf80Q0P641 193 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 LCP2Q13094 533 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 FAM189A2Q15884 450 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 KLHL36Q8N4N3 616 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 C14orf105Q9NVL8 296 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 TMED5Q9Y3A6 229 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 PCDHGB1Q9Y5G3 927 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 H0YJX3 145 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 OAZ1P54368 228 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 MCCD1P59942 119 aaPredicted RBP13.71□□□□□ -0.21
CSPG4-201ENST00000308508 SMARCB1Q12824 385 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 IL23RQ5VWK5 629 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 TMEM110Q86TL2 294 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 GLB1L3Q8NCI6 653 aaPredicted RBP13.71□□□□□ -0.21
CSPG4-201ENST00000308508 TNFRSF25Q93038 417 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 ITFG2Q969R8 447 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 SPATA9Q9BWV2 254 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 ZC3H13Q5T200 1668 aaKnown RBP13.71□□□□□ -0.21
CSPG4-201ENST00000308508 CXCR6O00574 342 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 CALCAP01258 141 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 ELFN1P0C7U0 828 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 CREMQ03060 361 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 PRKD1Q15139 912 aaPredicted RBP13.71□□□□□ -0.21
CSPG4-201ENST00000308508 SLC9B1Q4ZJI4 515 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 LENG8Q96PV6 779 aaPredicted RBP13.71□□□□□ -0.21
CSPG4-201ENST00000308508 MAGEB17A8MXT2 336 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 PRAMEF12O95522 483 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 TACSTD2P09758 323 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 RGS19P49795 217 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 TGFB2P61812 414 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 VLDLRP98155 873 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 SP140Q13342 867 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 SLC1A5Q15758 541 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 KLHL35Q6PF15 583 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 CFAP206Q8IYR0 622 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 UNC5BQ8IZJ1 945 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 ZNF431Q8TF32 576 aaPredicted RBP13.71□□□□□ -0.21
CSPG4-201ENST00000308508 CREB3L1Q96BA8 519 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 ZBTB45Q96K62 511 aaPredicted RBP13.71□□□□□ -0.21
CSPG4-201ENST00000308508 TM6SF2Q9BZW4 377 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 DNAJB9Q9UBS3 223 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 STK16O75716 305 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 GBX2P52951 348 aaPredicted RBP13.71□□□□□ -0.21
CSPG4-201ENST00000308508 ATP13A4Q4VNC1 1196 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 HSD17B12Q53GQ0 312 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 EIPR1Q53HC9 387 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 UBAP2Q5T6F2 1119 aaKnown RBP13.71□□□□□ -0.21
CSPG4-201ENST00000308508 SEC14L1Q92503 715 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 LRRIQ1Q96JM4 1722 aa13.71□□□□□ -0.21
CSPG4-201ENST00000308508 GADD45GO95257 159 aa13.71□□□□□ -0.22
CSPG4-201ENST00000308508 GSTT2P0CG29 244 aa13.71□□□□□ -0.22
CSPG4-201ENST00000308508 GALNT12Q8IXK2 581 aa13.71□□□□□ -0.22
CSPG4-201ENST00000308508 INPP4AQ96PE3 977 aaPredicted RBP13.71□□□□□ -0.22
CSPG4-201ENST00000308508 KCTD15Q96SI1 283 aaPredicted RBP13.71□□□□□ -0.22
CSPG4-201ENST00000308508 BRINP2Q9C0B6 783 aa13.71□□□□□ -0.22
CSPG4-201ENST00000308508 SPATC1LQ9H0A9 340 aa13.71□□□□□ -0.22
CSPG4-201ENST00000308508 FARSBQ9NSD9 589 aaKnown RBP13.71□□□□□ -0.22
CSPG4-201ENST00000308508 ENTPD6O75354 484 aa13.71□□□□□ -0.22
CSPG4-201ENST00000308508 DDX6P26196 483 aaKnown RBP eCLIP13.71□□□□□ -0.22
CSPG4-201ENST00000308508 HNRNPH3P31942 346 aaKnown RBP13.71□□□□□ -0.22
CSPG4-201ENST00000308508 RPL7AP62424 266 aaKnown RBP13.71□□□□□ -0.22
CSPG4-201ENST00000308508 GTF2H2Q13888 395 aa13.71□□□□□ -0.22
CSPG4-201ENST00000308508 FAM46CQ5VWP2 391 aa13.71□□□□□ -0.22
CSPG4-201ENST00000308508 GTF2H2CQ6P1K8 395 aa13.71□□□□□ -0.22
CSPG4-201ENST00000308508 C1orf186Q6ZWK4 172 aa13.71□□□□□ -0.22
CSPG4-201ENST00000308508 RAVER1Q8IY67 606 aaKnown RBP13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms