RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 TIFAQ96CG3 184 aa12.7□□□□□ -0.38
COL3A1-201ENST00000304636 FCRL5Q96RD9 977 aa12.7□□□□□ -0.38
COL3A1-201ENST00000304636 BCAS3Q9H6U6 928 aa12.7□□□□□ -0.38
COL3A1-201ENST00000304636 GOLGA2P5Q9HBQ8 144 aa12.7□□□□□ -0.38
COL3A1-201ENST00000304636 FAM105AQ9NUU6 356 aa12.7□□□□□ -0.38
COL3A1-201ENST00000304636 ZNF224Q9NZL3 707 aa12.7□□□□□ -0.38
COL3A1-201ENST00000304636 TRPS1Q9UHF7 1281 aa12.7□□□□□ -0.38
COL3A1-201ENST00000304636 KLHL33A6NCF5 533 aa12.7□□□□□ -0.38
COL3A1-201ENST00000304636 FABP12A6NFH5 140 aa12.7□□□□□ -0.38
COL3A1-201ENST00000304636 HLA-DQA2P01906 255 aa12.7□□□□□ -0.38
COL3A1-201ENST00000304636 FMO3P31513 532 aa12.7□□□□□ -0.38
COL3A1-201ENST00000304636 EPHX2P34913 555 aa12.7□□□□□ -0.38
COL3A1-201ENST00000304636 YAP1P46937 504 aaKnown RBP12.7□□□□□ -0.38
COL3A1-201ENST00000304636 CDH12P55289 794 aa12.7□□□□□ -0.38
COL3A1-201ENST00000304636 MPP2Q14168 576 aa12.7□□□□□ -0.38
COL3A1-201ENST00000304636 NCBP2-AS2Q69YL0 99 aa12.7□□□□□ -0.38
COL3A1-201ENST00000304636 BRSK1Q8TDC3 778 aa12.7□□□□□ -0.38
COL3A1-201ENST00000304636 CDCA5Q96FF9 252 aa12.7□□□□□ -0.38
COL3A1-201ENST00000304636 ZNF347Q96SE7 839 aa12.7□□□□□ -0.38
COL3A1-201ENST00000304636 SYNDIG1Q9H7V2 258 aa12.7□□□□□ -0.38
COL3A1-201ENST00000304636 AKTIPQ9H8T0 292 aa12.7□□□□□ -0.38
COL3A1-201ENST00000304636 CFL2Q9Y281 166 aa12.7□□□□□ -0.38
COL3A1-201ENST00000304636 RBM47A0AV96 593 aaKnown RBP12.69□□□□□ -0.38
COL3A1-201ENST00000304636 PGK1P00558 417 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 IFNGP01579 166 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 HIST1H2ABP04908 130 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 ECHS1P30084 290 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 PHC1P78364 1004 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 RHAGQ02094 409 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 E2F2Q14209 437 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 PCLAFQ15004 111 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 HIST3H2AQ7L7L0 130 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 CHPFQ8IZ52 775 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 ZNF655Q8N720 491 aaPredicted RBP12.69□□□□□ -0.38
COL3A1-201ENST00000304636 HIST1H2ACQ93077 130 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 TMEM209Q96SK2 561 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 FAM86C2PA6NEL3 165 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 CCL22O00626 93 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 ESR1P03372 595 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 SCNN1AP37088 669 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 AKR1D1P51857 326 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 NOMO2Q5JPE7 1267 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 TMBIM1Q969X1 311 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 C8orf48Q96LL4 319 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 ANKHQ9HCJ1 492 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 TAS2R7Q9NYW3 318 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 POLR1DQ9Y2S0 133 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 RIPK3Q9Y572 518 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 A8MT66 165 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 PABPC4LP0CB38 370 aaKnown RBP12.69□□□□□ -0.38
COL3A1-201ENST00000304636 GPR1P46091 355 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 RPIAP49247 311 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 NRLP54845 237 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 SRSF11Q05519 484 aaKnown RBP12.69□□□□□ -0.38
COL3A1-201ENST00000304636 SUZ12Q15022 739 aaKnown RBP12.69□□□□□ -0.38
COL3A1-201ENST00000304636 KCNA10Q16322 511 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 TAC4Q86UU9 113 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 STON2Q8WXE9 905 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 DMRTB1Q96MA1 342 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 SLC22A4Q9H015 551 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 MRPL17Q9NRX2 175 aaKnown RBP12.69□□□□□ -0.38
COL3A1-201ENST00000304636 CARD8Q9Y2G2 431 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 TESMINQ9Y4I5 508 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 ERAL1O75616 437 aaKnown RBP12.69□□□□□ -0.38
COL3A1-201ENST00000304636 PRKD3O94806 890 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 PENKP01210 267 aaPredicted RBP12.69□□□□□ -0.38
COL3A1-201ENST00000304636 ANXA4P09525 319 aaPredicted RBP12.69□□□□□ -0.38
COL3A1-201ENST00000304636 CLCN2P51788 898 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 ATXN1P54253 815 aaKnown RBP12.69□□□□□ -0.38
COL3A1-201ENST00000304636 DAOAP59103 153 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 RPS14P62263 151 aaKnown RBP12.69□□□□□ -0.38
COL3A1-201ENST00000304636 TUBA1BP68363 451 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 IFI44LQ53G44 452 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 COLEC12Q5KU26 742 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 HLA-DQA1Q5Y7H0 255 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 CHSY3Q70JA7 882 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 TUBA1AQ71U36 451 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 ANKRD23Q86SG2 305 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 C9orf43Q8TAL5 461 aaPredicted RBP12.69□□□□□ -0.38
COL3A1-201ENST00000304636 NKIRAS2Q9NYR9 191 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 DPP7Q9UHL4 492 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 OR6C75A6NL08 312 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 DLX3O60479 287 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 CFHP08603 1231 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 GNAZP19086 355 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 HDCP19113 662 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 BRCC3P46736 316 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 CCR4P51679 360 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 FNDC3BQ53EP0 1204 aaKnown RBP12.69□□□□□ -0.38
COL3A1-201ENST00000304636 USP30Q70CQ3 517 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 EMID1Q96A84 441 aaPredicted RBP12.69□□□□□ -0.38
COL3A1-201ENST00000304636 SLC27A5Q9Y2P5 690 aa12.69□□□□□ -0.38
COL3A1-201ENST00000304636 DLG5Q8TDM6 1919 aa12.68□□□□□ -0.38
COL3A1-201ENST00000304636 NEMP2A6NFY4 417 aa12.68□□□□□ -0.38
COL3A1-201ENST00000304636 J3QRK9 145 aa12.68□□□□□ -0.38
COL3A1-201ENST00000304636 NUDT14O95848 222 aa12.68□□□□□ -0.38
COL3A1-201ENST00000304636 TM4SF1P30408 202 aa12.68□□□□□ -0.38
COL3A1-201ENST00000304636 PTGER3P43115 390 aa12.68□□□□□ -0.38
COL3A1-201ENST00000304636 MXD1Q05195 221 aa12.68□□□□□ -0.38
COL3A1-201ENST00000304636 GAD2Q05329 585 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms