RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 LRRC3Q9BY71 257 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 GKN1Q9NS71 199 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 SEPT3Q9UH03 358 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 PCDHB9Q9Y5E1 797 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 LCHNA4D1U4 455 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 ASPDHA6ND91 283 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 G3V2T6 193 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 SEC22BO75396 215 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 ANXA6P08133 673 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 LPOP22079 712 aaPredicted RBP12.48□□□□□ -0.41
LIG1-201ENST00000263274 SHMT2P34897 504 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 SLC26A3P40879 764 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 HALP42357 657 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 GSSP48637 474 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 ARSFP54793 590 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 ERVPABLB-1P60509 514 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 DGCR6Q14129 220 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 BTG3Q14201 252 aaPredicted RBP12.48□□□□□ -0.41
LIG1-201ENST00000263274 SLC14A2Q15849 920 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 LETMD1Q6P1Q0 360 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 AFTPHQ6ULP2 937 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 ANKRD46Q86W74 232 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 HID1Q8IV36 788 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 CROCCP3Q8IVE0 287 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 C8orf59Q8N0T1 100 aaPredicted RBP12.48□□□□□ -0.41
LIG1-201ENST00000263274 MDGA1Q8NFP4 955 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 OR2T12Q8NG77 320 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 AURKBQ96GD4 344 aaPredicted RBP12.48□□□□□ -0.41
LIG1-201ENST00000263274 GLT1D1Q96MS3 346 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 PRDM5Q9NQX1 630 aaPredicted RBP12.48□□□□□ -0.41
LIG1-201ENST00000263274 MATN4O95460 622 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 CAPNS1P04632 268 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 RHOCP08134 193 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 POLR2IP36954 125 aaKnown RBP12.48□□□□□ -0.41
LIG1-201ENST00000263274 IL5RAQ01344 420 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 RCAN2Q14206 197 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 FAM174BQ3ZCQ3 159 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 RFTN2Q52LD8 501 aaPredicted RBP12.48□□□□□ -0.41
LIG1-201ENST00000263274 BROXQ5VW32 411 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 CYP20A1Q6UW02 462 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 ENPP6Q6UWR7 440 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 CD300LGQ6UXG3 332 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 R3HCC1LQ7Z5L2 792 aaKnown RBP12.48□□□□□ -0.41
LIG1-201ENST00000263274 FAM86B1Q8N7N1 296 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 RHEBL1Q8TAI7 183 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 PROKR1Q8TCW9 393 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 PLEKHA8Q96JA3 519 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 DPY30Q9C005 99 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 DERL2Q9GZP9 239 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 TOR3AQ9H497 397 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 IPPKQ9H8X2 491 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 INTS10Q9NVR2 710 aaKnown RBP12.48□□□□□ -0.41
LIG1-201ENST00000263274 WWOXQ9NZC7 414 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 ZNF225Q9UK10 706 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 PCTPQ9UKL6 214 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 SCML2Q9UQR0 700 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 RBMX2Q9Y388 322 aaKnown RBP12.48□□□□□ -0.41
LIG1-201ENST00000263274 RAI2Q9Y5P3 530 aa12.48□□□□□ -0.41
LIG1-201ENST00000263274 BRCA1P38398 1863 aaKnown RBP12.47□□□□□ -0.41
LIG1-201ENST00000263274 SH3PXD2BA1X283 911 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 XYLBO75191 536 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 ASGR1P07306 291 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 TCF3P15923 654 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 TGFBIQ15582 683 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 MAPKAPK3Q16644 382 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 PARP15Q460N3 678 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 FAM151BQ6UXP7 276 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 OR4F6Q8NGB9 312 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 SLC39A13Q96H72 371 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 CGREF1Q99674 301 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 UTS2RQ9UKP6 389 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 AGO1Q9UL18 857 aaKnown RBP12.47□□□□□ -0.41
LIG1-201ENST00000263274 M0QZQ0 153 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 PRAMEF11O60813 436 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 CYP11A1P05108 521 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 PORP16435 677 aaPredicted RBP12.47□□□□□ -0.41
LIG1-201ENST00000263274 OGNP20774 298 aaKnown RBP12.47□□□□□ -0.41
LIG1-201ENST00000263274 RXRGP48443 463 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 NFKB2Q00653 900 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 SPIDRQ14159 915 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 TRIP4Q15650 581 aaPredicted RBP12.47□□□□□ -0.41
LIG1-201ENST00000263274 C6orf183Q5T699 404 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 AFMIDQ63HM1 303 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 C8orf82Q6P1X6 216 aaPredicted RBP12.47□□□□□ -0.41
LIG1-201ENST00000263274 EFL1Q7Z2Z2 1120 aaKnown RBP12.47□□□□□ -0.41
LIG1-201ENST00000263274 NSUN3Q9H649 340 aaKnown RBP12.47□□□□□ -0.41
LIG1-201ENST00000263274 CD320Q9NPF0 282 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 PTBP2Q9UKA9 531 aaKnown RBP12.47□□□□□ -0.41
LIG1-201ENST00000263274 INVSQ9Y283 1065 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 PDCD11Q14690 1871 aaKnown RBP12.47□□□□□ -0.41
LIG1-201ENST00000263274 OTOFQ9HC10 1997 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.47□□□□□ -0.41
LIG1-201ENST00000263274 FAM234BA2RU67 622 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 TYW5A2RUC4 315 aaKnown RBP12.47□□□□□ -0.41
LIG1-201ENST00000263274 ARVCFO00192 962 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 SH3BGRLO75368 114 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 LRATO95237 230 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 ZNF682O95780 498 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 HRH2P25021 359 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 BMXP51813 675 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms