RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 TBRG4Q969Z0 631 aaKnown RBP eCLIP9□□□□□ -0.97
MSH4-201ENST00000263187 LHPPQ9H008 270 aa9□□□□□ -0.97
MSH4-201ENST00000263187 PLGRKTQ9HBL7 147 aa9□□□□□ -0.97
MSH4-201ENST00000263187 CIDEBQ9UHD4 219 aa9□□□□□ -0.97
MSH4-201ENST00000263187 GABRQQ9UN88 632 aa9□□□□□ -0.97
MSH4-201ENST00000263187 PCDHB5Q9Y5E4 795 aa9□□□□□ -0.97
MSH4-201ENST00000263187 LCHNA4D1U4 455 aa9□□□□□ -0.97
MSH4-201ENST00000263187 H0Y858 1186 aa9□□□□□ -0.97
MSH4-201ENST00000263187 E2F3O00716 465 aa9□□□□□ -0.97
MSH4-201ENST00000263187 XPNPEP2O43895 674 aa9□□□□□ -0.97
MSH4-201ENST00000263187 HS6ST1O60243 411 aa9□□□□□ -0.97
MSH4-201ENST00000263187 NOL3O60936 208 aaKnown RBP9□□□□□ -0.97
MSH4-201ENST00000263187 ATP6V1G1O75348 118 aa9□□□□□ -0.97
MSH4-201ENST00000263187 UROSP10746 265 aa9□□□□□ -0.97
MSH4-201ENST00000263187 ZNF157P51786 506 aaPredicted RBP9□□□□□ -0.97
MSH4-201ENST00000263187 BMXP51813 675 aa9□□□□□ -0.97
MSH4-201ENST00000263187 ARSFP54793 590 aa9□□□□□ -0.97
MSH4-201ENST00000263187 OXCT1P55809 520 aa9□□□□□ -0.97
MSH4-201ENST00000263187 PERM1Q5SV97 790 aa9□□□□□ -0.97
MSH4-201ENST00000263187 ARMC12Q5T9G4 340 aa9□□□□□ -0.97
MSH4-201ENST00000263187 UTS2BQ765I0 119 aa9□□□□□ -0.97
MSH4-201ENST00000263187 SPRED1Q7Z699 444 aa9□□□□□ -0.97
MSH4-201ENST00000263187 SAPCD2Q86UD0 394 aa9□□□□□ -0.97
MSH4-201ENST00000263187 SLC15A4Q8N697 577 aa9□□□□□ -0.97
MSH4-201ENST00000263187 TEX26Q8N6G2 289 aa9□□□□□ -0.97
MSH4-201ENST00000263187 OR56A4Q8NGH8 313 aa9□□□□□ -0.97
MSH4-201ENST00000263187 TBC1D15Q8TC07 691 aa9□□□□□ -0.97
MSH4-201ENST00000263187 SKA2Q8WVK7 121 aaPredicted RBP9□□□□□ -0.97
MSH4-201ENST00000263187 WBP2Q969T9 261 aa9□□□□□ -0.97
MSH4-201ENST00000263187 CCDC138Q96M89 665 aa9□□□□□ -0.97
MSH4-201ENST00000263187 GLT1D1Q96MS3 346 aa9□□□□□ -0.97
MSH4-201ENST00000263187 PPP1R2P1Q96PQ5 205 aa9□□□□□ -0.97
MSH4-201ENST00000263187 TRIM54Q9BYV2 358 aa9□□□□□ -0.97
MSH4-201ENST00000263187 DERL2Q9GZP9 239 aa9□□□□□ -0.97
MSH4-201ENST00000263187 FBXO44Q9H4M3 255 aa9□□□□□ -0.97
MSH4-201ENST00000263187 IPPKQ9H8X2 491 aa9□□□□□ -0.97
MSH4-201ENST00000263187 SLC6A13Q9NSD5 602 aa9□□□□□ -0.97
MSH4-201ENST00000263187 UBA2Q9UBT2 640 aaPredicted RBP9□□□□□ -0.97
MSH4-201ENST00000263187 KLQ9UEF7 1012 aa9□□□□□ -0.97
MSH4-201ENST00000263187 FCF1Q9Y324 198 aaKnown RBP9□□□□□ -0.97
MSH4-201ENST00000263187 PCDHGA11Q9Y5H2 935 aa9□□□□□ -0.97
MSH4-201ENST00000263187 K7ERQ8 282 aa9□□□□□ -0.97
MSH4-201ENST00000263187 MATN4O95460 622 aa9□□□□□ -0.97
MSH4-201ENST00000263187 TSPAN12O95859 305 aa9□□□□□ -0.97
MSH4-201ENST00000263187 CST1P01037 141 aa9□□□□□ -0.97
MSH4-201ENST00000263187 PRLP01236 227 aa9□□□□□ -0.97
MSH4-201ENST00000263187 GPIP06744 558 aa9□□□□□ -0.97
MSH4-201ENST00000263187 RPS17P08708 135 aaKnown RBP9□□□□□ -0.97
MSH4-201ENST00000263187 FAM163BP0C2L3 166 aa9□□□□□ -0.97
MSH4-201ENST00000263187 ELNP15502 786 aa9□□□□□ -0.97
MSH4-201ENST00000263187 HOXD9P28356 352 aaPredicted RBP9□□□□□ -0.97
MSH4-201ENST00000263187 HMOX2P30519 316 aa9□□□□□ -0.97
MSH4-201ENST00000263187 ZNF140P52738 457 aaPredicted RBP9□□□□□ -0.97
MSH4-201ENST00000263187 ERVK-8P63133 956 aa9□□□□□ -0.97
MSH4-201ENST00000263187 DGCR6Q14129 220 aa9□□□□□ -0.97
MSH4-201ENST00000263187 TAS1R1Q7RTX1 841 aa9□□□□□ -0.97
MSH4-201ENST00000263187 MRPL10Q7Z7H8 261 aaKnown RBP9□□□□□ -0.97
MSH4-201ENST00000263187 TBC1D21Q8IYX1 336 aa9□□□□□ -0.97
MSH4-201ENST00000263187 C10orf111Q8N326 155 aa9□□□□□ -0.97
MSH4-201ENST00000263187 CDC26Q8NHZ8 85 aa9□□□□□ -0.97
MSH4-201ENST00000263187 RHEBL1Q8TAI7 183 aa9□□□□□ -0.97
MSH4-201ENST00000263187 CD200R1Q8TD46 325 aa9□□□□□ -0.97
MSH4-201ENST00000263187 SNX19Q92543 992 aa9□□□□□ -0.97
MSH4-201ENST00000263187 DUS3LQ96G46 650 aaKnown RBP9□□□□□ -0.97
MSH4-201ENST00000263187 BDH2Q9BUT1 245 aa9□□□□□ -0.97
MSH4-201ENST00000263187 ACTL8Q9H568 366 aa9□□□□□ -0.97
MSH4-201ENST00000263187 PFDN4Q9NQP4 134 aa9□□□□□ -0.97
MSH4-201ENST00000263187 SELENONQ9NZV5 590 aa9□□□□□ -0.97
MSH4-201ENST00000263187 ADGRE2Q9UHX3 823 aa9□□□□□ -0.97
MSH4-201ENST00000263187 AGO1Q9UL18 857 aaKnown RBP9□□□□□ -0.97
MSH4-201ENST00000263187 ANGPTL3Q9Y5C1 460 aa9□□□□□ -0.97
MSH4-201ENST00000263187 PCDHGA8Q9Y5G5 932 aa9□□□□□ -0.97
MSH4-201ENST00000263187 GOLGA4Q13439 2230 aaKnown RBP8.99□□□□□ -0.97
MSH4-201ENST00000263187 MITFO75030 526 aaPredicted RBP8.99□□□□□ -0.97
MSH4-201ENST00000263187 GMNNO75496 209 aa8.99□□□□□ -0.97
MSH4-201ENST00000263187 EEDO75530 441 aaKnown RBP8.99□□□□□ -0.97
MSH4-201ENST00000263187 PRKD3O94806 890 aa8.99□□□□□ -0.97
MSH4-201ENST00000263187 MYCLP1P12525 358 aaPredicted RBP8.99□□□□□ -0.97
MSH4-201ENST00000263187 NEK2P51955 445 aa8.99□□□□□ -0.97
MSH4-201ENST00000263187 PHEXP78562 749 aa8.99□□□□□ -0.97
MSH4-201ENST00000263187 CHRNB3Q05901 458 aa8.99□□□□□ -0.97
MSH4-201ENST00000263187 SPIDRQ14159 915 aa8.99□□□□□ -0.97
MSH4-201ENST00000263187 TRIP4Q15650 581 aaPredicted RBP8.99□□□□□ -0.97
MSH4-201ENST00000263187 SPANXN4Q5MJ08 99 aa8.99□□□□□ -0.97
MSH4-201ENST00000263187 DLEU7Q6UYE1 221 aa8.99□□□□□ -0.97
MSH4-201ENST00000263187 CCDC81Q6ZN84 652 aa8.99□□□□□ -0.97
MSH4-201ENST00000263187 TMEM173Q86WV6 379 aaPredicted RBP8.99□□□□□ -0.97
MSH4-201ENST00000263187 LRRC49Q8IUZ0 686 aa8.99□□□□□ -0.97
MSH4-201ENST00000263187 HID1Q8IV36 788 aa8.99□□□□□ -0.97
MSH4-201ENST00000263187 RNF175Q8N4F7 328 aa8.99□□□□□ -0.97
MSH4-201ENST00000263187 FAM162AQ96A26 154 aa8.99□□□□□ -0.97
MSH4-201ENST00000263187 CSF3RQ99062 836 aa8.99□□□□□ -0.97
MSH4-201ENST00000263187 CGREF1Q99674 301 aa8.99□□□□□ -0.97
MSH4-201ENST00000263187 LRRC3Q9BY71 257 aa8.99□□□□□ -0.97
MSH4-201ENST00000263187 TLR8Q9NR97 1041 aaKnown RBP8.99□□□□□ -0.97
MSH4-201ENST00000263187 CHCHD3Q9NX63 227 aaKnown RBP8.99□□□□□ -0.97
MSH4-201ENST00000263187 SLC30A1Q9Y6M5 507 aa8.99□□□□□ -0.97
MSH4-201ENST00000263187 SYCE1LA8MT33 242 aa8.99□□□□□ -0.97
MSH4-201ENST00000263187 G3V2T6 193 aa8.99□□□□□ -0.97
MSH4-201ENST00000263187 K7EPI3 171 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms