RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 FAM171A1Q5VUB5 890 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 GALNT5Q7Z7M9 940 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 MON1AQ86VX9 555 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 PCYOX1LQ8NBM8 494 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 PDPRQ8NCN5 879 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 BRSK1Q8TDC3 778 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 ROPN1LQ96C74 230 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 GIPC1O14908 333 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 TAF2Q6P1X5 1199 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 METTL23Q86XA0 190 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 DDI1Q8WTU0 396 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 MBOAT4Q96T53 435 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 PARK7Q99497 189 aaKnown RBP10.54□□□□□ -0.72
USP28-201ENST00000003302 C17orf80Q9BSJ5 609 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 POLR1EQ9GZS1 481 aaKnown RBP10.54□□□□□ -0.72
USP28-201ENST00000003302 LSM1O15116 133 aaKnown RBP10.54□□□□□ -0.72
USP28-201ENST00000003302 IGHA2P01877 340 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 RPL9P32969 192 aaKnown RBP10.54□□□□□ -0.72
USP28-201ENST00000003302 CDKN2CP42773 168 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 CASP9P55211 416 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 TYSND1Q2T9J0 566 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 ZRANB3Q5FWF4 1079 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 SPANXN4Q5MJ08 99 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 ADNP2Q6IQ32 1131 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 FAM117BQ6P1L5 589 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 TRIM74Q86UV6 250 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 TRIM73Q86UV7 250 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 CCDC117Q8IWD4 279 aaPredicted RBP10.54□□□□□ -0.72
USP28-201ENST00000003302 CHPFQ8IZ52 775 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 ADNPQ9H2P0 1102 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 CLEC4EQ9ULY5 219 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 SCML2Q9UQR0 700 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 FCF1Q9Y324 198 aaKnown RBP10.54□□□□□ -0.72
USP28-201ENST00000003302 PCDHB3Q9Y5E6 796 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 TAPBPO15533 448 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 F11P03951 625 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 ALPLP05186 524 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 HSPA13P48723 471 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 ARSFP54793 590 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 ARF5P84085 180 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 BFSP2Q13515 415 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 SBSNQ6UWP8 590 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 CALML6Q8TD86 181 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 TOP1MTQ969P6 601 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 FEM1CQ96JP0 617 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 A8MU76 341 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 M0QZ92 97 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 CRCPO75575 148 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 MATN4O95460 622 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 ESRRBO95718 433 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 GSSP48637 474 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 CDC42EP1Q00587 391 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 NFATC3Q12968 1075 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 PCBP1Q15365 356 aaKnown RBP eCLIP10.54□□□□□ -0.72
USP28-201ENST00000003302 HACD2Q6Y1H2 254 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 SAPCD2Q86UD0 394 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 BBS5Q8N3I7 341 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 DHRSXQ8N5I4 330 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 BPIFB1Q8TDL5 484 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 C1orf74Q96LT6 269 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 POLE4Q9NR33 117 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 CCL27Q9Y4X3 112 aa10.54□□□□□ -0.72
USP28-201ENST00000003302 C2orf78A6NCI8 922 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 WASH4PA8MWX3 477 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 SMAD6O43541 496 aaKnown RBP10.53□□□□□ -0.72
USP28-201ENST00000003302 ADAM23O75077 832 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 HTR1BP28222 390 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 CAPGP40121 348 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 KIAA0040Q15053 153 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 MAPRE2Q15555 327 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 FAM174BQ3ZCQ3 159 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 ANKS6Q68DC2 871 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 FAM151BQ6UXP7 276 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 Q6ZPB1 254 aaPredicted RBP10.53□□□□□ -0.72
USP28-201ENST00000003302 PRR23BQ6ZRT6 265 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 ZUFSPQ96AP4 578 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 PYCR2Q96C36 320 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 CCDC126Q96EE4 140 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 OSBPL6Q9BZF3 934 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 CD274Q9NZQ7 290 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 DNMT3BQ9UBC3 853 aaKnown RBP10.53□□□□□ -0.72
USP28-201ENST00000003302 PLXNA3P51805 1871 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 AQP12BA6NM10 295 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 GAPDHSO14556 408 aaPredicted RBP10.53□□□□□ -0.72
USP28-201ENST00000003302 LRATO95237 230 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 TACR2P21452 398 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 PLA2G16P53816 162 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 RPL38P63173 70 aaKnown RBP10.53□□□□□ -0.72
USP28-201ENST00000003302 AQP12AQ8IXF9 295 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 COLGALT2Q8IYK4 626 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 TSPAN17Q96FV3 270 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 INPP5KQ9BT40 448 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 PADI4Q9UM07 663 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 FAF1Q9UNN5 650 aaPredicted RBP10.53□□□□□ -0.72
USP28-201ENST00000003302 DLGAP4Q9Y2H0 992 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 PSMD3O43242 534 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 NBNO60934 754 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 MYCLP1P12525 358 aaPredicted RBP10.53□□□□□ -0.72
USP28-201ENST00000003302 MTHFRP42898 656 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 CLCN7P51798 805 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms