RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 GTSE1Q9NYZ3 720 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 MTCH1Q9NZJ7 389 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 HIF3AQ9Y2N7 669 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 CCDC88AQ3V6T2 1871 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 C22orf46C9J442 243 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 CLDN3O15551 220 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 DHX15O43143 795 aaKnown RBP3.54□□□□□ -1.84
SCN1A-221ENST00000641996 IGHEP01854 428 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 HOXB1P14653 301 aaPredicted RBP3.54□□□□□ -1.84
SCN1A-221ENST00000641996 GCLMP48507 274 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 CEBPAP49715 358 aaPredicted RBP3.54□□□□□ -1.84
SCN1A-221ENST00000641996 DCAF7P61962 342 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 CREB5Q02930 508 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 GRB10Q13322 594 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 PTGR1Q14914 329 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 MFSD13AQ14CX5 517 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 SLC9C2Q5TAH2 1124 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 BBS12Q6ZW61 710 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 RASGEF1CQ8N431 466 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 ADAMTS16Q8TE57 1224 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 CKAP2Q8WWK9 683 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 CCDC126Q96EE4 140 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 CDRT15Q96T59 188 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 AGXT2Q9BYV1 514 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 HDHD2Q9H0R4 259 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 PPA2Q9H2U2 334 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 OR51B5Q9H339 312 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 RHOFQ9HBH0 211 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 KCND2Q9NZV8 630 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 BCS1LQ9Y276 419 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 TRBV2A0A0J9YWF9 115 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 TEX13DA0A0J9YY54 714 aaPredicted RBP3.54□□□□□ -1.84
SCN1A-221ENST00000641996 ATP5J2-PTCD1G3V325 749 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 UBDO15205 165 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 AP5Z1O43299 807 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 AKAP3O75969 853 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 COL6A2P12110 1019 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 SERPINA4P29622 427 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 MC5RP33032 325 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 SLC10A7Q0GE19 358 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 DNASE1L3Q13609 305 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 ADRM1Q16186 407 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 NDUFA9Q16795 377 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 SEL1L3Q68CR1 1132 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 CYB5R4Q7L1T6 521 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 ACBD4Q8NC06 268 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 SEMA6DQ8NFY4 1073 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 NDRG1Q92597 394 aaKnown RBP3.54□□□□□ -1.84
SCN1A-221ENST00000641996 RIOX1Q9H6W3 641 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 DZANK1Q9NVP4 752 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 HEY2Q9UBP5 337 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 RTL9Q8NET4 1388 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 EML1O00423 815 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 FZD6O60353 706 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 PFKMP08237 780 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 USP17L7P0C7H9 530 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 RPS6KB1P23443 525 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 RFC2P35250 354 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 ATP6V0D1P61421 351 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 SLAQ13239 276 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 PDK3Q15120 406 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 AARDQ4LEZ3 155 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 PAN2Q504Q3 1202 aaKnown RBP3.54□□□□□ -1.84
SCN1A-221ENST00000641996 LZTR1Q8N653 840 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 OR8J1Q8NGP2 316 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 LPPQ93052 612 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 TSPAN17Q96FV3 270 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 RHOVQ96L33 236 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF184Q99676 751 aaPredicted RBP3.54□□□□□ -1.84
SCN1A-221ENST00000641996 SIRT7Q9NRC8 400 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 RSL24D1Q9UHA3 163 aaKnown RBP3.54□□□□□ -1.84
SCN1A-221ENST00000641996 GUCA1BQ9UMX6 200 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 ACTL7AQ9Y615 435 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 SHROOM3Q8TF72 1996 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 CD2P06729 351 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 CHRNDQ07001 517 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 DPYSL2Q16555 572 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF697Q5TEC3 545 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 IL20RBQ6UXL0 311 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 GSTA5Q7RTV2 222 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 FAM98AQ8NCA5 519 aaKnown RBP3.54□□□□□ -1.84
SCN1A-221ENST00000641996 RNF125Q96EQ8 232 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 LENG8Q96PV6 779 aaPredicted RBP3.54□□□□□ -1.84
SCN1A-221ENST00000641996 CCDC32Q9BV29 185 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 IL1RL2Q9HB29 575 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 TM9SF3Q9HD45 589 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 MID1IP1Q9NPA3 183 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 IL37Q9NZH6 218 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 MAP3K19Q56UN5 1328 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 MAGEB6P1A0A0J9YX57 407 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 LCHNA4D1U4 455 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 GRM8O00222 908 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 YY2O15391 372 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 RGS16O15492 202 aaPredicted RBP3.54□□□□□ -1.84
SCN1A-221ENST00000641996 SELLP14151 372 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 SOX18P35713 384 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 CCR10P46092 362 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 VLDLRP98155 873 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 ECT2LQ008S8 904 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 POU4F1Q01851 419 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms